Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16620

Experiment: RCH2_defined_noCarbon with Glu_DLac_Acetate_mix 1 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16615 and BWI76_RS16620 are separated by 198 nucleotidesBWI76_RS16620 and BWI76_RS16625 are separated by 373 nucleotides BWI76_RS16615: BWI76_RS16615 - FAD/NAD(P) binding domain-containing protein, at 3,439,840 to 3,441,450 _RS16615 BWI76_RS16620: BWI76_RS16620 - TIGR00156 family protein, at 3,441,649 to 3,442,041 _RS16620 BWI76_RS16625: BWI76_RS16625 - putative oxidoreductase, at 3,442,415 to 3,443,299 _RS16625 Position (kb) 3441 3442 3443Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3440.669 kb on + strand, within BWI76_RS16615at 3440.757 kb on - strand, within BWI76_RS16615at 3440.907 kb on + strand, within BWI76_RS16615at 3440.907 kb on + strand, within BWI76_RS16615at 3440.907 kb on + strand, within BWI76_RS16615at 3441.281 kb on + strand, within BWI76_RS16615at 3441.281 kb on + strand, within BWI76_RS16615at 3441.281 kb on + strand, within BWI76_RS16615at 3441.289 kb on - strand, within BWI76_RS16615at 3441.289 kb on - strand, within BWI76_RS16615at 3441.393 kb on + strandat 3441.401 kb on - strandat 3441.401 kb on - strandat 3441.590 kb on - strandat 3441.633 kb on + strandat 3441.721 kb on + strand, within BWI76_RS16620at 3441.731 kb on + strand, within BWI76_RS16620at 3441.764 kb on + strand, within BWI76_RS16620at 3441.772 kb on - strand, within BWI76_RS16620at 3441.774 kb on + strand, within BWI76_RS16620at 3441.781 kb on + strand, within BWI76_RS16620at 3441.782 kb on - strand, within BWI76_RS16620at 3441.801 kb on + strand, within BWI76_RS16620at 3441.833 kb on + strand, within BWI76_RS16620at 3441.865 kb on + strand, within BWI76_RS16620at 3441.888 kb on + strand, within BWI76_RS16620at 3441.890 kb on + strand, within BWI76_RS16620at 3441.890 kb on + strand, within BWI76_RS16620at 3441.890 kb on + strand, within BWI76_RS16620at 3441.890 kb on + strand, within BWI76_RS16620at 3441.890 kb on + strand, within BWI76_RS16620at 3441.890 kb on + strand, within BWI76_RS16620at 3441.890 kb on + strand, within BWI76_RS16620at 3441.890 kb on + strand, within BWI76_RS16620at 3441.890 kb on + strand, within BWI76_RS16620at 3441.890 kb on + strand, within BWI76_RS16620at 3441.890 kb on + strand, within BWI76_RS16620at 3441.896 kb on - strand, within BWI76_RS16620at 3441.898 kb on - strand, within BWI76_RS16620at 3441.898 kb on - strand, within BWI76_RS16620at 3441.898 kb on - strand, within BWI76_RS16620at 3441.898 kb on - strand, within BWI76_RS16620at 3441.973 kb on + strand, within BWI76_RS16620at 3441.978 kb on + strandat 3442.049 kb on + strandat 3442.052 kb on - strandat 3442.052 kb on - strandat 3442.057 kb on - strandat 3442.058 kb on + strandat 3442.066 kb on - strandat 3442.215 kb on - strandat 3442.262 kb on - strandat 3442.385 kb on + strandat 3442.385 kb on + strandat 3442.408 kb on + strandat 3442.416 kb on - strandat 3442.416 kb on - strandat 3442.457 kb on - strandat 3442.526 kb on + strand, within BWI76_RS16625at 3442.526 kb on + strand, within BWI76_RS16625at 3442.592 kb on + strand, within BWI76_RS16625at 3442.729 kb on + strand, within BWI76_RS16625at 3442.776 kb on - strand, within BWI76_RS16625at 3443.007 kb on + strand, within BWI76_RS16625

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Glu_DLac_Acetate_mix 1 x
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3,440,669 + BWI76_RS16615 0.51 -1.0
3,440,757 - BWI76_RS16615 0.57 +1.2
3,440,907 + BWI76_RS16615 0.66 -0.3
3,440,907 + BWI76_RS16615 0.66 +0.6
3,440,907 + BWI76_RS16615 0.66 -0.4
3,441,281 + BWI76_RS16615 0.89 -0.0
3,441,281 + BWI76_RS16615 0.89 +0.6
3,441,281 + BWI76_RS16615 0.89 +1.6
3,441,289 - BWI76_RS16615 0.90 -0.0
3,441,289 - BWI76_RS16615 0.90 -3.4
3,441,393 + -1.5
3,441,401 - -3.2
3,441,401 - -2.9
3,441,590 - +0.8
3,441,633 + +3.8
3,441,721 + BWI76_RS16620 0.18 -0.5
3,441,731 + BWI76_RS16620 0.21 +0.5
3,441,764 + BWI76_RS16620 0.29 +0.9
3,441,772 - BWI76_RS16620 0.31 -0.5
3,441,774 + BWI76_RS16620 0.32 +0.4
3,441,781 + BWI76_RS16620 0.34 -0.0
3,441,782 - BWI76_RS16620 0.34 +0.6
3,441,801 + BWI76_RS16620 0.39 -0.1
3,441,833 + BWI76_RS16620 0.47 -0.2
3,441,865 + BWI76_RS16620 0.55 -0.9
3,441,888 + BWI76_RS16620 0.61 +1.3
3,441,890 + BWI76_RS16620 0.61 -0.2
3,441,890 + BWI76_RS16620 0.61 +1.1
3,441,890 + BWI76_RS16620 0.61 -0.1
3,441,890 + BWI76_RS16620 0.61 -1.1
3,441,890 + BWI76_RS16620 0.61 -0.2
3,441,890 + BWI76_RS16620 0.61 +0.9
3,441,890 + BWI76_RS16620 0.61 -1.5
3,441,890 + BWI76_RS16620 0.61 +0.4
3,441,890 + BWI76_RS16620 0.61 +0.5
3,441,890 + BWI76_RS16620 0.61 -0.2
3,441,890 + BWI76_RS16620 0.61 -1.5
3,441,896 - BWI76_RS16620 0.63 +0.4
3,441,898 - BWI76_RS16620 0.63 -2.5
3,441,898 - BWI76_RS16620 0.63 -1.7
3,441,898 - BWI76_RS16620 0.63 -1.7
3,441,898 - BWI76_RS16620 0.63 +1.3
3,441,973 + BWI76_RS16620 0.82 -0.3
3,441,978 + -1.5
3,442,049 + -2.9
3,442,052 - +0.2
3,442,052 - -0.3
3,442,057 - -0.2
3,442,058 + +0.5
3,442,066 - -2.6
3,442,215 - -0.9
3,442,262 - -1.0
3,442,385 + +0.8
3,442,385 + -0.8
3,442,408 + -0.2
3,442,416 - +1.2
3,442,416 - -2.0
3,442,457 - -0.7
3,442,526 + BWI76_RS16625 0.13 -0.7
3,442,526 + BWI76_RS16625 0.13 -0.7
3,442,592 + BWI76_RS16625 0.20 -1.6
3,442,729 + BWI76_RS16625 0.35 +1.3
3,442,776 - BWI76_RS16625 0.41 -0.9
3,443,007 + BWI76_RS16625 0.67 +0.1

Or see this region's nucleotide sequence