Experiment: RCH2_defined_noCarbon with Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14570 and BWI76_RS14575 are separated by 88 nucleotides BWI76_RS14575 and BWI76_RS14580 overlap by 1 nucleotides BWI76_RS14580 and BWI76_RS14585 are separated by 26 nucleotides BWI76_RS14585 and BWI76_RS14590 are separated by 1 nucleotides
BWI76_RS14570: BWI76_RS14570 - hypothetical protein, at 3,058,955 to 3,059,515
_RS14570
BWI76_RS14575: BWI76_RS14575 - TENA/THI-4 family protein, at 3,059,604 to 3,060,248
_RS14575
BWI76_RS14580: BWI76_RS14580 - hypothetical protein, at 3,060,248 to 3,061,093
_RS14580
BWI76_RS14585: BWI76_RS14585 - ribokinase, at 3,061,120 to 3,061,992
_RS14585
BWI76_RS14590: BWI76_RS14590 - putative ABC transport system nucleotide binding/ATPase component, at 3,061,994 to 3,062,947
_RS14590
Position (kb)
3060
3061
3062 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3059.281 kb on + strand, within BWI76_RS14570 at 3059.324 kb on + strand, within BWI76_RS14570 at 3059.353 kb on - strand, within BWI76_RS14570 at 3059.370 kb on - strand, within BWI76_RS14570 at 3059.548 kb on + strand at 3059.548 kb on + strand at 3059.651 kb on - strand at 3059.768 kb on + strand, within BWI76_RS14575 at 3059.982 kb on - strand, within BWI76_RS14575 at 3060.294 kb on + strand at 3060.335 kb on - strand, within BWI76_RS14580 at 3060.403 kb on + strand, within BWI76_RS14580 at 3060.411 kb on - strand, within BWI76_RS14580 at 3060.477 kb on + strand, within BWI76_RS14580 at 3060.737 kb on + strand at 3060.745 kb on - strand, within BWI76_RS14580 at 3060.772 kb on + strand, within BWI76_RS14580 at 3060.783 kb on - strand, within BWI76_RS14580 at 3060.790 kb on - strand, within BWI76_RS14580 at 3060.790 kb on - strand, within BWI76_RS14580 at 3060.852 kb on + strand at 3060.872 kb on - strand, within BWI76_RS14580 at 3060.875 kb on + strand, within BWI76_RS14580 at 3061.004 kb on - strand, within BWI76_RS14580 at 3061.110 kb on + strand at 3061.110 kb on + strand at 3061.110 kb on + strand at 3061.118 kb on - strand at 3061.118 kb on - strand at 3061.118 kb on - strand at 3061.118 kb on - strand at 3061.118 kb on - strand at 3061.213 kb on - strand, within BWI76_RS14585 at 3061.306 kb on - strand, within BWI76_RS14585 at 3061.316 kb on - strand, within BWI76_RS14585 at 3061.316 kb on - strand, within BWI76_RS14585 at 3061.410 kb on - strand, within BWI76_RS14585 at 3061.410 kb on - strand, within BWI76_RS14585 at 3061.464 kb on - strand, within BWI76_RS14585 at 3061.478 kb on - strand, within BWI76_RS14585 at 3061.478 kb on - strand, within BWI76_RS14585 at 3061.535 kb on - strand, within BWI76_RS14585 at 3061.566 kb on - strand, within BWI76_RS14585 at 3061.568 kb on - strand, within BWI76_RS14585 at 3061.568 kb on - strand, within BWI76_RS14585 at 3061.568 kb on - strand, within BWI76_RS14585 at 3061.568 kb on - strand, within BWI76_RS14585 at 3061.568 kb on - strand, within BWI76_RS14585 at 3061.583 kb on + strand, within BWI76_RS14585 at 3061.591 kb on - strand, within BWI76_RS14585 at 3061.591 kb on - strand, within BWI76_RS14585 at 3061.591 kb on - strand, within BWI76_RS14585 at 3061.594 kb on + strand, within BWI76_RS14585 at 3061.594 kb on + strand, within BWI76_RS14585 at 3061.594 kb on + strand, within BWI76_RS14585 at 3061.594 kb on + strand, within BWI76_RS14585 at 3061.596 kb on + strand, within BWI76_RS14585 at 3061.596 kb on + strand, within BWI76_RS14585 at 3061.596 kb on + strand, within BWI76_RS14585 at 3061.596 kb on + strand, within BWI76_RS14585 at 3061.596 kb on + strand, within BWI76_RS14585 at 3061.602 kb on - strand, within BWI76_RS14585 at 3061.604 kb on - strand, within BWI76_RS14585 at 3061.604 kb on - strand, within BWI76_RS14585 at 3061.604 kb on - strand, within BWI76_RS14585 at 3061.604 kb on - strand, within BWI76_RS14585 at 3061.604 kb on - strand, within BWI76_RS14585 at 3061.691 kb on - strand, within BWI76_RS14585 at 3061.712 kb on + strand, within BWI76_RS14585 at 3061.799 kb on - strand, within BWI76_RS14585 at 3061.849 kb on - strand, within BWI76_RS14585 at 3061.957 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Glu_DLac_Acetate_mix 1 x remove 3,059,281 + BWI76_RS14570 0.58 -0.5 3,059,324 + BWI76_RS14570 0.66 -1.9 3,059,353 - BWI76_RS14570 0.71 -0.3 3,059,370 - BWI76_RS14570 0.74 -1.0 3,059,548 + +1.0 3,059,548 + -0.4 3,059,651 - +1.0 3,059,768 + BWI76_RS14575 0.25 +0.5 3,059,982 - BWI76_RS14575 0.59 -0.1 3,060,294 + -0.1 3,060,335 - BWI76_RS14580 0.10 +0.3 3,060,403 + BWI76_RS14580 0.18 -1.1 3,060,411 - BWI76_RS14580 0.19 -0.1 3,060,477 + BWI76_RS14580 0.27 -0.1 3,060,737 + -0.1 3,060,745 - BWI76_RS14580 0.59 +0.3 3,060,772 + BWI76_RS14580 0.62 -1.9 3,060,783 - BWI76_RS14580 0.63 +0.9 3,060,790 - BWI76_RS14580 0.64 +0.3 3,060,790 - BWI76_RS14580 0.64 -1.1 3,060,852 + +0.9 3,060,872 - BWI76_RS14580 0.74 -1.9 3,060,875 + BWI76_RS14580 0.74 -0.7 3,061,004 - BWI76_RS14580 0.89 -3.0 3,061,110 + -0.7 3,061,110 + +0.6 3,061,110 + -2.4 3,061,118 - -2.1 3,061,118 - +0.5 3,061,118 - +0.9 3,061,118 - +1.2 3,061,118 - -2.1 3,061,213 - BWI76_RS14585 0.11 -0.1 3,061,306 - BWI76_RS14585 0.21 -0.2 3,061,316 - BWI76_RS14585 0.22 +0.7 3,061,316 - BWI76_RS14585 0.22 -1.9 3,061,410 - BWI76_RS14585 0.33 +1.7 3,061,410 - BWI76_RS14585 0.33 +0.5 3,061,464 - BWI76_RS14585 0.39 -1.1 3,061,478 - BWI76_RS14585 0.41 -0.1 3,061,478 - BWI76_RS14585 0.41 -0.1 3,061,535 - BWI76_RS14585 0.48 +1.0 3,061,566 - BWI76_RS14585 0.51 +0.5 3,061,568 - BWI76_RS14585 0.51 +0.2 3,061,568 - BWI76_RS14585 0.51 +0.3 3,061,568 - BWI76_RS14585 0.51 -0.2 3,061,568 - BWI76_RS14585 0.51 +0.5 3,061,568 - BWI76_RS14585 0.51 -0.2 3,061,583 + BWI76_RS14585 0.53 -0.9 3,061,591 - BWI76_RS14585 0.54 +0.1 3,061,591 - BWI76_RS14585 0.54 -0.1 3,061,591 - BWI76_RS14585 0.54 +0.3 3,061,594 + BWI76_RS14585 0.54 -0.1 3,061,594 + BWI76_RS14585 0.54 -1.7 3,061,594 + BWI76_RS14585 0.54 -0.5 3,061,594 + BWI76_RS14585 0.54 +0.9 3,061,596 + BWI76_RS14585 0.55 -1.3 3,061,596 + BWI76_RS14585 0.55 +2.5 3,061,596 + BWI76_RS14585 0.55 -0.1 3,061,596 + BWI76_RS14585 0.55 -3.0 3,061,596 + BWI76_RS14585 0.55 -0.1 3,061,602 - BWI76_RS14585 0.55 -3.4 3,061,604 - BWI76_RS14585 0.55 -0.4 3,061,604 - BWI76_RS14585 0.55 +0.2 3,061,604 - BWI76_RS14585 0.55 -0.9 3,061,604 - BWI76_RS14585 0.55 -2.6 3,061,604 - BWI76_RS14585 0.55 +0.4 3,061,691 - BWI76_RS14585 0.65 +0.9 3,061,712 + BWI76_RS14585 0.68 +0.4 3,061,799 - BWI76_RS14585 0.78 -0.4 3,061,849 - BWI76_RS14585 0.84 -1.9 3,061,957 - +0.2
Or see this region's nucleotide sequence