Experiment: RCH2_defined_noCarbon with Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11965 and BWI76_RS11970 overlap by 1 nucleotides BWI76_RS11970 and BWI76_RS11975 are separated by 97 nucleotides BWI76_RS11975 and BWI76_RS11980 are separated by 261 nucleotides BWI76_RS11980 and BWI76_RS11985 are separated by 72 nucleotides BWI76_RS11985 and BWI76_RS11990 are separated by 177 nucleotides
BWI76_RS11965: BWI76_RS11965 - orotidine-5'-phosphate decarboxylase, at 2,519,399 to 2,520,136
_RS11965
BWI76_RS11970: BWI76_RS11970 - stress response translation initiation inhibitor YciH, at 2,520,136 to 2,520,462
_RS11970
BWI76_RS11975: BWI76_RS11975 - lipoprotein, at 2,520,560 to 2,520,781
_RS11975
BWI76_RS11980: BWI76_RS11980 - DeoR family transcriptional regulator, at 2,521,043 to 2,521,792
_RS11980
BWI76_RS11985: BWI76_RS11985 - hypothetical protein, at 2,521,865 to 2,522,047
_RS11985
BWI76_RS11990: BWI76_RS11990 - exoribonuclease II, at 2,522,225 to 2,524,159
_RS11990
Position (kb)
2521
2522 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2520.053 kb on + strand, within BWI76_RS11965 at 2520.231 kb on - strand, within BWI76_RS11970 at 2520.364 kb on + strand, within BWI76_RS11970 at 2520.384 kb on + strand, within BWI76_RS11970 at 2520.427 kb on + strand, within BWI76_RS11970 at 2520.440 kb on + strand at 2520.509 kb on + strand at 2520.595 kb on - strand, within BWI76_RS11975 at 2520.613 kb on - strand, within BWI76_RS11975 at 2520.614 kb on + strand, within BWI76_RS11975 at 2520.621 kb on + strand, within BWI76_RS11975 at 2520.621 kb on + strand, within BWI76_RS11975 at 2520.622 kb on - strand, within BWI76_RS11975 at 2520.622 kb on - strand, within BWI76_RS11975 at 2520.622 kb on - strand, within BWI76_RS11975 at 2520.627 kb on - strand, within BWI76_RS11975 at 2520.629 kb on - strand, within BWI76_RS11975 at 2520.629 kb on - strand, within BWI76_RS11975 at 2520.632 kb on + strand, within BWI76_RS11975 at 2520.640 kb on - strand, within BWI76_RS11975 at 2520.642 kb on + strand, within BWI76_RS11975 at 2520.660 kb on - strand, within BWI76_RS11975 at 2520.700 kb on + strand, within BWI76_RS11975 at 2520.700 kb on + strand, within BWI76_RS11975 at 2520.705 kb on + strand, within BWI76_RS11975 at 2520.737 kb on + strand, within BWI76_RS11975 at 2520.742 kb on + strand, within BWI76_RS11975 at 2520.742 kb on + strand at 2520.835 kb on - strand at 2520.853 kb on - strand at 2520.865 kb on + strand at 2520.880 kb on + strand at 2520.888 kb on - strand at 2520.889 kb on - strand at 2520.889 kb on - strand at 2520.889 kb on - strand at 2520.889 kb on - strand at 2520.889 kb on - strand at 2520.900 kb on + strand at 2520.900 kb on + strand at 2520.900 kb on + strand at 2520.900 kb on + strand at 2520.908 kb on - strand at 2520.908 kb on - strand at 2520.908 kb on - strand at 2520.908 kb on - strand at 2520.923 kb on - strand at 2520.923 kb on - strand at 2520.938 kb on - strand at 2521.020 kb on + strand at 2521.023 kb on - strand at 2521.030 kb on + strand at 2521.041 kb on + strand at 2521.041 kb on + strand at 2521.068 kb on + strand at 2521.356 kb on + strand, within BWI76_RS11980 at 2521.622 kb on - strand, within BWI76_RS11980 at 2521.805 kb on + strand at 2521.881 kb on + strand at 2521.881 kb on + strand at 2521.881 kb on + strand at 2521.881 kb on + strand at 2521.889 kb on - strand, within BWI76_RS11985 at 2521.889 kb on - strand, within BWI76_RS11985 at 2521.889 kb on - strand, within BWI76_RS11985 at 2521.978 kb on - strand, within BWI76_RS11985 at 2522.049 kb on + strand at 2522.057 kb on - strand at 2522.057 kb on - strand at 2522.198 kb on + strand at 2522.198 kb on + strand at 2522.206 kb on - strand at 2522.588 kb on - strand, within BWI76_RS11990
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Glu_DLac_Acetate_mix 1 x remove 2,520,053 + BWI76_RS11965 0.89 -3.4 2,520,231 - BWI76_RS11970 0.29 -0.0 2,520,364 + BWI76_RS11970 0.70 +0.3 2,520,384 + BWI76_RS11970 0.76 -0.5 2,520,427 + BWI76_RS11970 0.89 +0.3 2,520,440 + +0.5 2,520,509 + +0.9 2,520,595 - BWI76_RS11975 0.16 -0.2 2,520,613 - BWI76_RS11975 0.24 -0.4 2,520,614 + BWI76_RS11975 0.24 -1.6 2,520,621 + BWI76_RS11975 0.27 +0.3 2,520,621 + BWI76_RS11975 0.27 +1.0 2,520,622 - BWI76_RS11975 0.28 +0.3 2,520,622 - BWI76_RS11975 0.28 -1.0 2,520,622 - BWI76_RS11975 0.28 +0.1 2,520,627 - BWI76_RS11975 0.30 -2.1 2,520,629 - BWI76_RS11975 0.31 +0.9 2,520,629 - BWI76_RS11975 0.31 +0.5 2,520,632 + BWI76_RS11975 0.32 +0.0 2,520,640 - BWI76_RS11975 0.36 +0.5 2,520,642 + BWI76_RS11975 0.37 -1.2 2,520,660 - BWI76_RS11975 0.45 -0.2 2,520,700 + BWI76_RS11975 0.63 +2.6 2,520,700 + BWI76_RS11975 0.63 -1.3 2,520,705 + BWI76_RS11975 0.65 -1.6 2,520,737 + BWI76_RS11975 0.80 -0.4 2,520,742 + BWI76_RS11975 0.82 -0.6 2,520,742 + +1.0 2,520,835 - -0.5 2,520,853 - +0.2 2,520,865 + +0.7 2,520,880 + -0.2 2,520,888 - -0.7 2,520,889 - +0.9 2,520,889 - +0.7 2,520,889 - +0.1 2,520,889 - +0.2 2,520,889 - +0.2 2,520,900 + +0.2 2,520,900 + +2.2 2,520,900 + -2.0 2,520,900 + +0.0 2,520,908 - -0.5 2,520,908 - +0.3 2,520,908 - -0.5 2,520,908 - +0.4 2,520,923 - +0.5 2,520,923 - +0.7 2,520,938 - +0.6 2,521,020 + +0.3 2,521,023 - +0.3 2,521,030 + +0.1 2,521,041 + +0.4 2,521,041 + -0.3 2,521,068 + -0.0 2,521,356 + BWI76_RS11980 0.42 -2.1 2,521,622 - BWI76_RS11980 0.77 -2.2 2,521,805 + -1.7 2,521,881 + +0.1 2,521,881 + -0.1 2,521,881 + +0.1 2,521,881 + -0.2 2,521,889 - BWI76_RS11985 0.13 +0.5 2,521,889 - BWI76_RS11985 0.13 +0.3 2,521,889 - BWI76_RS11985 0.13 -0.6 2,521,978 - BWI76_RS11985 0.62 +0.4 2,522,049 + +0.7 2,522,057 - +0.0 2,522,057 - -0.8 2,522,198 + +0.0 2,522,198 + +0.9 2,522,206 - -3.3 2,522,588 - BWI76_RS11990 0.19 +0.2
Or see this region's nucleotide sequence