Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11205

Experiment: RCH2_defined_noCarbon with Glu_DLac_Acetate_mix 1 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11200 and BWI76_RS11205 are separated by 167 nucleotidesBWI76_RS11205 and BWI76_RS11210 are separated by 296 nucleotides BWI76_RS11200: BWI76_RS11200 - transpeptidase, at 2,360,690 to 2,361,649 _RS11200 BWI76_RS11205: BWI76_RS11205 - transcription-repair coupling factor, at 2,361,817 to 2,365,263 _RS11205 BWI76_RS11210: BWI76_RS11210 - outer membrane-specific lipoprotein transporter subunit LolC, at 2,365,560 to 2,366,768 _RS11210 Position (kb) 2361 2362 2363 2364 2365 2366Strain fitness (log2 ratio) -2 -1 0 1 2at 2361.103 kb on - strand, within BWI76_RS11200at 2361.289 kb on + strand, within BWI76_RS11200at 2361.427 kb on + strand, within BWI76_RS11200at 2361.446 kb on - strand, within BWI76_RS11200at 2361.446 kb on - strand, within BWI76_RS11200at 2362.876 kb on - strandat 2363.114 kb on - strand, within BWI76_RS11205at 2363.127 kb on + strand, within BWI76_RS11205at 2363.127 kb on + strand, within BWI76_RS11205at 2363.172 kb on + strand, within BWI76_RS11205at 2363.965 kb on + strand, within BWI76_RS11205at 2364.250 kb on - strand, within BWI76_RS11205at 2364.730 kb on - strand, within BWI76_RS11205

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Glu_DLac_Acetate_mix 1 x
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2,361,103 - BWI76_RS11200 0.43 -1.4
2,361,289 + BWI76_RS11200 0.62 +2.1
2,361,427 + BWI76_RS11200 0.77 +1.0
2,361,446 - BWI76_RS11200 0.79 -1.1
2,361,446 - BWI76_RS11200 0.79 -2.3
2,362,876 - +0.9
2,363,114 - BWI76_RS11205 0.38 -2.5
2,363,127 + BWI76_RS11205 0.38 -1.8
2,363,127 + BWI76_RS11205 0.38 -1.0
2,363,172 + BWI76_RS11205 0.39 +0.9
2,363,965 + BWI76_RS11205 0.62 -1.1
2,364,250 - BWI76_RS11205 0.71 -2.3
2,364,730 - BWI76_RS11205 0.85 -2.5

Or see this region's nucleotide sequence