Experiment: RCH2_defined_noCarbon with Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS05825 and BWI76_RS05830 are separated by 163 nucleotides BWI76_RS05830 and BWI76_RS05835 are separated by 112 nucleotides BWI76_RS05835 and BWI76_RS05840 are separated by 10 nucleotides
BWI76_RS05825: BWI76_RS05825 - putative site specific integrase, at 1,223,637 to 1,224,821
_RS05825
BWI76_RS05830: BWI76_RS05830 - tRNA-Thr, at 1,224,985 to 1,225,060
_RS05830
BWI76_RS05835: BWI76_RS05835 - gamma-glutamyl-phosphate reductase, at 1,225,173 to 1,226,426
_RS05835
BWI76_RS05840: BWI76_RS05840 - glutamate 5-kinase, at 1,226,437 to 1,227,540
_RS05840
Position (kb)
1225
1226
1227 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1224.182 kb on - strand, within BWI76_RS05825 at 1224.224 kb on + strand, within BWI76_RS05825 at 1224.249 kb on - strand, within BWI76_RS05825 at 1224.302 kb on + strand, within BWI76_RS05825 at 1224.302 kb on + strand, within BWI76_RS05825 at 1224.310 kb on - strand, within BWI76_RS05825 at 1224.310 kb on - strand, within BWI76_RS05825 at 1224.310 kb on - strand, within BWI76_RS05825 at 1224.310 kb on - strand, within BWI76_RS05825 at 1224.315 kb on - strand, within BWI76_RS05825 at 1224.323 kb on - strand, within BWI76_RS05825 at 1224.370 kb on + strand, within BWI76_RS05825 at 1224.378 kb on - strand, within BWI76_RS05825 at 1224.378 kb on - strand, within BWI76_RS05825 at 1224.508 kb on + strand, within BWI76_RS05825 at 1224.722 kb on + strand at 1224.765 kb on - strand at 1224.766 kb on + strand at 1224.772 kb on - strand at 1224.869 kb on - strand at 1225.339 kb on + strand, within BWI76_RS05835 at 1225.528 kb on - strand, within BWI76_RS05835 at 1226.142 kb on + strand, within BWI76_RS05835 at 1226.142 kb on + strand, within BWI76_RS05835 at 1226.310 kb on + strand at 1226.318 kb on + strand at 1226.364 kb on + strand at 1226.501 kb on - strand at 1226.919 kb on - strand, within BWI76_RS05840 at 1226.955 kb on + strand, within BWI76_RS05840 at 1226.980 kb on - strand, within BWI76_RS05840 at 1227.056 kb on - strand, within BWI76_RS05840 at 1227.180 kb on + strand, within BWI76_RS05840 at 1227.356 kb on - strand, within BWI76_RS05840 at 1227.387 kb on + strand, within BWI76_RS05840
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Glu_DLac_Acetate_mix 1 x remove 1,224,182 - BWI76_RS05825 0.46 -2.3 1,224,224 + BWI76_RS05825 0.50 -0.1 1,224,249 - BWI76_RS05825 0.52 -0.1 1,224,302 + BWI76_RS05825 0.56 -3.0 1,224,302 + BWI76_RS05825 0.56 -0.6 1,224,310 - BWI76_RS05825 0.57 -0.2 1,224,310 - BWI76_RS05825 0.57 +0.9 1,224,310 - BWI76_RS05825 0.57 -3.6 1,224,310 - BWI76_RS05825 0.57 -0.1 1,224,315 - BWI76_RS05825 0.57 -3.1 1,224,323 - BWI76_RS05825 0.58 -0.5 1,224,370 + BWI76_RS05825 0.62 -2.1 1,224,378 - BWI76_RS05825 0.63 +0.9 1,224,378 - BWI76_RS05825 0.63 +0.4 1,224,508 + BWI76_RS05825 0.74 +0.2 1,224,722 + -0.4 1,224,765 - +0.5 1,224,766 + -1.6 1,224,772 - +0.9 1,224,869 - +0.1 1,225,339 + BWI76_RS05835 0.13 -1.1 1,225,528 - BWI76_RS05835 0.28 -2.2 1,226,142 + BWI76_RS05835 0.77 -1.4 1,226,142 + BWI76_RS05835 0.77 -1.4 1,226,310 + -1.1 1,226,318 + -2.2 1,226,364 + -0.6 1,226,501 - -1.6 1,226,919 - BWI76_RS05840 0.44 -2.5 1,226,955 + BWI76_RS05840 0.47 -2.9 1,226,980 - BWI76_RS05840 0.49 -2.9 1,227,056 - BWI76_RS05840 0.56 -0.6 1,227,180 + BWI76_RS05840 0.67 +0.9 1,227,356 - BWI76_RS05840 0.83 -1.4 1,227,387 + BWI76_RS05840 0.86 -2.1
Or see this region's nucleotide sequence