Experiment: RCH2_defined_noCarbon with Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS05530 and BWI76_RS05535 are separated by 2 nucleotides BWI76_RS05535 and BWI76_RS05540 are separated by 111 nucleotides BWI76_RS05540 and BWI76_RS05545 are separated by 258 nucleotides BWI76_RS05545 and BWI76_RS05550 are separated by 106 nucleotides
BWI76_RS05530: BWI76_RS05530 - DNA polymerase IV, at 1,158,943 to 1,159,998
_RS05530
BWI76_RS05535: BWI76_RS05535 - acyltransferase, at 1,160,001 to 1,160,492
_RS05535
BWI76_RS05540: BWI76_RS05540 - cytosol nonspecific dipeptidase, at 1,160,604 to 1,162,061
_RS05540
BWI76_RS05545: BWI76_RS05545 - xanthine phosphoribosyltransferase, at 1,162,320 to 1,162,778
_RS05545
BWI76_RS05550: BWI76_RS05550 - fermentation/respiration switch protein, at 1,162,885 to 1,164,129
_RS05550
Position (kb) 1160
1161
1162
1163 Strain fitness (log2 ratio) -2
-1
0
1 at 1159.886 kb on - strand, within BWI76_RS05530 at 1159.944 kb on + strand at 1159.969 kb on - strand at 1159.984 kb on + strand at 1159.991 kb on + strand at 1160.492 kb on + strand at 1160.586 kb on + strand at 1160.594 kb on - strand at 1160.644 kb on + strand at 1160.649 kb on + strand at 1160.649 kb on + strand at 1160.652 kb on - strand at 1160.715 kb on + strand at 1160.763 kb on + strand, within BWI76_RS05540 at 1160.763 kb on + strand, within BWI76_RS05540 at 1160.763 kb on + strand, within BWI76_RS05540 at 1160.810 kb on - strand, within BWI76_RS05540 at 1161.053 kb on + strand, within BWI76_RS05540 at 1161.387 kb on + strand, within BWI76_RS05540 at 1161.387 kb on + strand, within BWI76_RS05540 at 1161.387 kb on + strand, within BWI76_RS05540 at 1161.395 kb on - strand, within BWI76_RS05540 at 1161.395 kb on - strand, within BWI76_RS05540 at 1161.395 kb on - strand, within BWI76_RS05540 at 1161.535 kb on + strand, within BWI76_RS05540 at 1161.537 kb on - strand, within BWI76_RS05540 at 1161.826 kb on + strand, within BWI76_RS05540 at 1161.948 kb on + strand at 1161.995 kb on + strand at 1162.151 kb on + strand at 1162.185 kb on + strand at 1162.193 kb on - strand at 1162.256 kb on - strand at 1162.302 kb on - strand at 1162.304 kb on + strand at 1162.312 kb on - strand at 1162.312 kb on - strand at 1162.314 kb on - strand at 1162.728 kb on - strand, within BWI76_RS05545 at 1162.989 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Glu_DLac_Acetate_mix 1 x remove 1,159,886 - BWI76_RS05530 0.89 +0.3 1,159,944 + -0.4 1,159,969 - +1.0 1,159,984 + -0.2 1,159,991 + -0.4 1,160,492 + +0.5 1,160,586 + +0.4 1,160,594 - +0.4 1,160,644 + -0.0 1,160,649 + +0.0 1,160,649 + -0.3 1,160,652 - -0.1 1,160,715 + +0.4 1,160,763 + BWI76_RS05540 0.11 +1.5 1,160,763 + BWI76_RS05540 0.11 -0.8 1,160,763 + BWI76_RS05540 0.11 +0.7 1,160,810 - BWI76_RS05540 0.14 +0.6 1,161,053 + BWI76_RS05540 0.31 -0.4 1,161,387 + BWI76_RS05540 0.54 -1.0 1,161,387 + BWI76_RS05540 0.54 -0.0 1,161,387 + BWI76_RS05540 0.54 +0.3 1,161,395 - BWI76_RS05540 0.54 +0.5 1,161,395 - BWI76_RS05540 0.54 +0.1 1,161,395 - BWI76_RS05540 0.54 -1.0 1,161,535 + BWI76_RS05540 0.64 -0.4 1,161,537 - BWI76_RS05540 0.64 -0.1 1,161,826 + BWI76_RS05540 0.84 -2.1 1,161,948 + -0.9 1,161,995 + -0.0 1,162,151 + -2.6 1,162,185 + +0.0 1,162,193 - -2.2 1,162,256 - -0.2 1,162,302 - +0.4 1,162,304 + +0.5 1,162,312 - +0.3 1,162,312 - -0.7 1,162,314 - -1.0 1,162,728 - BWI76_RS05545 0.89 -1.6 1,162,989 - -0.7
Or see this region's nucleotide sequence