Experiment: Mannobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02177 and SMc02176 are separated by 227 nucleotides SMc02176 and SMc02175 are separated by 61 nucleotides
SMc02177: SMc02177 - hypothetical protein, at 517,659 to 518,273
SMc02177
SMc02176: SMc02176 - adenylate cyclase transmembrane protein, at 518,501 to 520,372
SMc02176
SMc02175: SMc02175 - transcriptional regulator, at 520,434 to 521,138
SMc02175
Position (kb) 518
519
520
521 Strain fitness (log2 ratio) -1
0
1 at 517.599 kb on + strand at 517.848 kb on + strand, within SMc02177 at 517.848 kb on + strand, within SMc02177 at 517.848 kb on + strand, within SMc02177 at 517.849 kb on - strand, within SMc02177 at 517.941 kb on + strand, within SMc02177 at 517.942 kb on - strand, within SMc02177 at 518.150 kb on + strand, within SMc02177 at 518.184 kb on - strand, within SMc02177 at 518.184 kb on - strand, within SMc02177 at 518.281 kb on - strand at 518.281 kb on - strand at 518.712 kb on + strand, within SMc02176 at 518.712 kb on + strand, within SMc02176 at 518.713 kb on - strand, within SMc02176 at 518.747 kb on + strand, within SMc02176 at 518.870 kb on + strand, within SMc02176 at 518.871 kb on - strand, within SMc02176 at 518.871 kb on - strand, within SMc02176 at 518.871 kb on - strand, within SMc02176 at 518.982 kb on + strand, within SMc02176 at 518.982 kb on + strand, within SMc02176 at 518.983 kb on - strand, within SMc02176 at 518.983 kb on - strand, within SMc02176 at 519.113 kb on + strand, within SMc02176 at 519.113 kb on + strand, within SMc02176 at 519.114 kb on - strand, within SMc02176 at 519.114 kb on - strand, within SMc02176 at 519.114 kb on - strand, within SMc02176 at 519.114 kb on - strand, within SMc02176 at 519.117 kb on + strand, within SMc02176 at 519.144 kb on + strand, within SMc02176 at 519.279 kb on + strand, within SMc02176 at 519.279 kb on + strand, within SMc02176 at 519.279 kb on + strand, within SMc02176 at 519.279 kb on + strand, within SMc02176 at 519.280 kb on - strand, within SMc02176 at 519.280 kb on - strand, within SMc02176 at 519.331 kb on + strand, within SMc02176 at 519.332 kb on - strand, within SMc02176 at 519.366 kb on + strand, within SMc02176 at 519.366 kb on + strand, within SMc02176 at 519.783 kb on + strand, within SMc02176 at 519.800 kb on + strand, within SMc02176 at 520.186 kb on - strand at 520.186 kb on - strand at 520.192 kb on + strand at 520.193 kb on - strand at 520.193 kb on - strand at 520.305 kb on + strand at 520.306 kb on - strand at 520.306 kb on - strand at 520.306 kb on - strand at 520.306 kb on - strand at 520.383 kb on - strand at 520.383 kb on - strand at 520.690 kb on + strand, within SMc02175 at 520.817 kb on - strand, within SMc02175 at 520.817 kb on - strand, within SMc02175 at 520.817 kb on - strand, within SMc02175 at 520.984 kb on + strand, within SMc02175 at 520.984 kb on + strand, within SMc02175 at 520.985 kb on - strand, within SMc02175 at 520.985 kb on - strand, within SMc02175 at 521.056 kb on - strand, within SMc02175 at 521.056 kb on - strand, within SMc02175 at 521.092 kb on - strand at 521.092 kb on - strand at 521.278 kb on - strand at 521.311 kb on + strand at 521.333 kb on + strand at 521.333 kb on + strand at 521.334 kb on - strand at 521.334 kb on - strand at 521.334 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mannobiose (C) remove 517,599 + +0.3 517,848 + SMc02177 0.31 -0.2 517,848 + SMc02177 0.31 -0.1 517,848 + SMc02177 0.31 +0.5 517,849 - SMc02177 0.31 +0.8 517,941 + SMc02177 0.46 +0.2 517,942 - SMc02177 0.46 -0.1 518,150 + SMc02177 0.80 -0.0 518,184 - SMc02177 0.85 -0.0 518,184 - SMc02177 0.85 -0.9 518,281 - -0.1 518,281 - +0.1 518,712 + SMc02176 0.11 +0.1 518,712 + SMc02176 0.11 +0.7 518,713 - SMc02176 0.11 +0.0 518,747 + SMc02176 0.13 +1.2 518,870 + SMc02176 0.20 -0.2 518,871 - SMc02176 0.20 -0.5 518,871 - SMc02176 0.20 +0.0 518,871 - SMc02176 0.20 +1.0 518,982 + SMc02176 0.26 +0.4 518,982 + SMc02176 0.26 +0.0 518,983 - SMc02176 0.26 +0.4 518,983 - SMc02176 0.26 +1.0 519,113 + SMc02176 0.33 +0.1 519,113 + SMc02176 0.33 +0.0 519,114 - SMc02176 0.33 +0.4 519,114 - SMc02176 0.33 +0.2 519,114 - SMc02176 0.33 -0.7 519,114 - SMc02176 0.33 +0.2 519,117 + SMc02176 0.33 +0.1 519,144 + SMc02176 0.34 -0.3 519,279 + SMc02176 0.42 -0.4 519,279 + SMc02176 0.42 -0.3 519,279 + SMc02176 0.42 +0.8 519,279 + SMc02176 0.42 +0.3 519,280 - SMc02176 0.42 +0.3 519,280 - SMc02176 0.42 +0.9 519,331 + SMc02176 0.44 +0.2 519,332 - SMc02176 0.44 -0.6 519,366 + SMc02176 0.46 +0.5 519,366 + SMc02176 0.46 +0.9 519,783 + SMc02176 0.68 +0.0 519,800 + SMc02176 0.69 -0.2 520,186 - -0.3 520,186 - +0.8 520,192 + -1.0 520,193 - +0.7 520,193 - +0.5 520,305 + +0.3 520,306 - +0.4 520,306 - +0.3 520,306 - -0.5 520,306 - -0.1 520,383 - +0.8 520,383 - +0.2 520,690 + SMc02175 0.36 +0.5 520,817 - SMc02175 0.54 +1.6 520,817 - SMc02175 0.54 +0.1 520,817 - SMc02175 0.54 +0.7 520,984 + SMc02175 0.78 -0.2 520,984 + SMc02175 0.78 -0.2 520,985 - SMc02175 0.78 +0.1 520,985 - SMc02175 0.78 +0.3 521,056 - SMc02175 0.88 -0.1 521,056 - SMc02175 0.88 -0.6 521,092 - +0.5 521,092 - -0.3 521,278 - -0.5 521,311 + -0.4 521,333 + +0.5 521,333 + -0.0 521,334 - +1.2 521,334 - -0.0 521,334 - +1.0
Or see this region's nucleotide sequence