Experiment: Mannobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00705 and SMc00704 are separated by 404 nucleotides SMc00704 and SMc00703 are separated by 135 nucleotides SMc00703 and SMc00702 are separated by 82 nucleotides
SMc00705: SMc00705 - signal peptide protein, at 2,874,231 to 2,875,034
SMc00705
SMc00704: SMc00704 - 50S ribosomal protein L28, at 2,875,439 to 2,875,729
SMc00704
SMc00703: SMc00703 - hypothetical protein, at 2,875,865 to 2,876,503
SMc00703
SMc00702: SMc00702 - signal peptide protein, at 2,876,586 to 2,877,578
SMc00702
Position (kb)
2875
2876
2877 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2874.910 kb on + strand, within SMc00705 at 2874.911 kb on - strand, within SMc00705 at 2875.082 kb on - strand at 2875.082 kb on - strand at 2875.087 kb on + strand at 2875.088 kb on - strand at 2875.088 kb on - strand at 2875.088 kb on - strand at 2875.121 kb on + strand at 2875.121 kb on + strand at 2875.121 kb on + strand at 2875.122 kb on - strand at 2875.126 kb on - strand at 2875.126 kb on - strand at 2875.126 kb on - strand at 2875.207 kb on + strand at 2875.208 kb on - strand at 2875.260 kb on + strand at 2875.261 kb on - strand at 2875.849 kb on - strand at 2875.859 kb on - strand at 2875.879 kb on + strand at 2875.886 kb on + strand at 2875.886 kb on + strand at 2875.887 kb on - strand at 2875.887 kb on - strand at 2875.887 kb on - strand at 2875.892 kb on + strand at 2875.892 kb on + strand at 2875.893 kb on - strand at 2875.943 kb on + strand, within SMc00703 at 2876.009 kb on + strand, within SMc00703 at 2876.310 kb on + strand, within SMc00703 at 2876.311 kb on - strand, within SMc00703 at 2876.419 kb on - strand, within SMc00703 at 2876.419 kb on - strand, within SMc00703 at 2876.488 kb on - strand at 2876.518 kb on + strand at 2876.688 kb on - strand, within SMc00702 at 2876.688 kb on - strand, within SMc00702 at 2876.705 kb on + strand, within SMc00702 at 2876.719 kb on + strand, within SMc00702 at 2876.720 kb on - strand, within SMc00702 at 2876.720 kb on - strand, within SMc00702 at 2876.798 kb on + strand, within SMc00702 at 2876.798 kb on + strand, within SMc00702 at 2877.127 kb on + strand, within SMc00702 at 2877.127 kb on + strand, within SMc00702 at 2877.127 kb on + strand, within SMc00702 at 2877.415 kb on - strand, within SMc00702 at 2877.478 kb on - strand, within SMc00702
Per-strain Table
Position Strand Gene LocusTag Fraction Mannobiose (C) remove 2,874,910 + SMc00705 0.84 +0.2 2,874,911 - SMc00705 0.85 -0.3 2,875,082 - -0.3 2,875,082 - -0.5 2,875,087 + +0.4 2,875,088 - +0.4 2,875,088 - +0.1 2,875,088 - -0.3 2,875,121 + +0.4 2,875,121 + +0.2 2,875,121 + -0.8 2,875,122 - -0.7 2,875,126 - -1.5 2,875,126 - -0.1 2,875,126 - +0.5 2,875,207 + +0.7 2,875,208 - -0.1 2,875,260 + -0.6 2,875,261 - -0.2 2,875,849 - -0.2 2,875,859 - +0.1 2,875,879 + -1.3 2,875,886 + +1.3 2,875,886 + -0.1 2,875,887 - -0.1 2,875,887 - +0.2 2,875,887 - -0.6 2,875,892 + +0.0 2,875,892 + -1.7 2,875,893 - +0.4 2,875,943 + SMc00703 0.12 +1.9 2,876,009 + SMc00703 0.23 +0.9 2,876,310 + SMc00703 0.70 +0.3 2,876,311 - SMc00703 0.70 -1.2 2,876,419 - SMc00703 0.87 -0.3 2,876,419 - SMc00703 0.87 +1.6 2,876,488 - +0.2 2,876,518 + -1.8 2,876,688 - SMc00702 0.10 +1.3 2,876,688 - SMc00702 0.10 +0.3 2,876,705 + SMc00702 0.12 -0.7 2,876,719 + SMc00702 0.13 -0.8 2,876,720 - SMc00702 0.13 +0.8 2,876,720 - SMc00702 0.13 +0.1 2,876,798 + SMc00702 0.21 -0.4 2,876,798 + SMc00702 0.21 -0.1 2,877,127 + SMc00702 0.54 -0.4 2,877,127 + SMc00702 0.54 -0.4 2,877,127 + SMc00702 0.54 -0.7 2,877,415 - SMc00702 0.83 +0.2 2,877,478 - SMc00702 0.90 -0.5
Or see this region's nucleotide sequence