Strain Fitness in Sinorhizobium meliloti 1021 around SMc00703

Experiment: Mannobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00705 and SMc00704 are separated by 404 nucleotidesSMc00704 and SMc00703 are separated by 135 nucleotidesSMc00703 and SMc00702 are separated by 82 nucleotides SMc00705: SMc00705 - signal peptide protein, at 2,874,231 to 2,875,034 SMc00705 SMc00704: SMc00704 - 50S ribosomal protein L28, at 2,875,439 to 2,875,729 SMc00704 SMc00703: SMc00703 - hypothetical protein, at 2,875,865 to 2,876,503 SMc00703 SMc00702: SMc00702 - signal peptide protein, at 2,876,586 to 2,877,578 SMc00702 Position (kb) 2875 2876 2877Strain fitness (log2 ratio) -2 -1 0 1 2at 2874.910 kb on + strand, within SMc00705at 2874.911 kb on - strand, within SMc00705at 2875.082 kb on - strandat 2875.082 kb on - strandat 2875.087 kb on + strandat 2875.088 kb on - strandat 2875.088 kb on - strandat 2875.088 kb on - strandat 2875.121 kb on + strandat 2875.121 kb on + strandat 2875.121 kb on + strandat 2875.122 kb on - strandat 2875.126 kb on - strandat 2875.126 kb on - strandat 2875.126 kb on - strandat 2875.207 kb on + strandat 2875.208 kb on - strandat 2875.260 kb on + strandat 2875.261 kb on - strandat 2875.849 kb on - strandat 2875.859 kb on - strandat 2875.879 kb on + strandat 2875.886 kb on + strandat 2875.886 kb on + strandat 2875.887 kb on - strandat 2875.887 kb on - strandat 2875.887 kb on - strandat 2875.892 kb on + strandat 2875.892 kb on + strandat 2875.893 kb on - strandat 2875.943 kb on + strand, within SMc00703at 2876.009 kb on + strand, within SMc00703at 2876.310 kb on + strand, within SMc00703at 2876.311 kb on - strand, within SMc00703at 2876.419 kb on - strand, within SMc00703at 2876.419 kb on - strand, within SMc00703at 2876.488 kb on - strandat 2876.518 kb on + strandat 2876.688 kb on - strand, within SMc00702at 2876.688 kb on - strand, within SMc00702at 2876.705 kb on + strand, within SMc00702at 2876.719 kb on + strand, within SMc00702at 2876.720 kb on - strand, within SMc00702at 2876.720 kb on - strand, within SMc00702at 2876.798 kb on + strand, within SMc00702at 2876.798 kb on + strand, within SMc00702at 2877.127 kb on + strand, within SMc00702at 2877.127 kb on + strand, within SMc00702at 2877.127 kb on + strand, within SMc00702at 2877.415 kb on - strand, within SMc00702at 2877.478 kb on - strand, within SMc00702

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Per-strain Table

Position Strand Gene LocusTag Fraction Mannobiose (C)
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2,874,910 + SMc00705 0.84 +0.2
2,874,911 - SMc00705 0.85 -0.3
2,875,082 - -0.3
2,875,082 - -0.5
2,875,087 + +0.4
2,875,088 - +0.4
2,875,088 - +0.1
2,875,088 - -0.3
2,875,121 + +0.4
2,875,121 + +0.2
2,875,121 + -0.8
2,875,122 - -0.7
2,875,126 - -1.5
2,875,126 - -0.1
2,875,126 - +0.5
2,875,207 + +0.7
2,875,208 - -0.1
2,875,260 + -0.6
2,875,261 - -0.2
2,875,849 - -0.2
2,875,859 - +0.1
2,875,879 + -1.3
2,875,886 + +1.3
2,875,886 + -0.1
2,875,887 - -0.1
2,875,887 - +0.2
2,875,887 - -0.6
2,875,892 + +0.0
2,875,892 + -1.7
2,875,893 - +0.4
2,875,943 + SMc00703 0.12 +1.9
2,876,009 + SMc00703 0.23 +0.9
2,876,310 + SMc00703 0.70 +0.3
2,876,311 - SMc00703 0.70 -1.2
2,876,419 - SMc00703 0.87 -0.3
2,876,419 - SMc00703 0.87 +1.6
2,876,488 - +0.2
2,876,518 + -1.8
2,876,688 - SMc00702 0.10 +1.3
2,876,688 - SMc00702 0.10 +0.3
2,876,705 + SMc00702 0.12 -0.7
2,876,719 + SMc00702 0.13 -0.8
2,876,720 - SMc00702 0.13 +0.8
2,876,720 - SMc00702 0.13 +0.1
2,876,798 + SMc00702 0.21 -0.4
2,876,798 + SMc00702 0.21 -0.1
2,877,127 + SMc00702 0.54 -0.4
2,877,127 + SMc00702 0.54 -0.4
2,877,127 + SMc00702 0.54 -0.7
2,877,415 - SMc00702 0.83 +0.2
2,877,478 - SMc00702 0.90 -0.5

Or see this region's nucleotide sequence