Strain Fitness in Sinorhizobium meliloti 1021 around SMa1927

Experiment: Mannobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1924 and SMa1927 are separated by 336 nucleotidesSMa1927 and SMa1929 are separated by 592 nucleotides SMa1924: SMa1924 - hypothetical protein, at 1,095,016 to 1,095,690 SMa1924 SMa1927: SMa1927 - hypothetical protein, at 1,096,027 to 1,097,019 SMa1927 SMa1929: SMa1929 - hypothetical protein, at 1,097,612 to 1,098,121 SMa1929 Position (kb) 1096 1097 1098Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1095.579 kb on - strand, within SMa1924at 1095.670 kb on + strandat 1095.718 kb on - strandat 1095.806 kb on - strandat 1095.850 kb on + strandat 1095.906 kb on + strandat 1095.907 kb on - strandat 1095.966 kb on + strandat 1095.967 kb on - strandat 1095.967 kb on - strandat 1096.007 kb on - strandat 1096.032 kb on - strandat 1096.309 kb on - strand, within SMa1927at 1096.510 kb on + strand, within SMa1927at 1096.510 kb on + strand, within SMa1927at 1096.510 kb on + strand, within SMa1927at 1096.510 kb on + strandat 1096.511 kb on - strand, within SMa1927at 1096.539 kb on - strandat 1096.590 kb on + strand, within SMa1927at 1096.590 kb on + strand, within SMa1927at 1096.591 kb on - strand, within SMa1927at 1096.792 kb on + strand, within SMa1927at 1096.792 kb on + strand, within SMa1927at 1096.793 kb on - strand, within SMa1927at 1096.793 kb on - strand, within SMa1927at 1096.794 kb on + strand, within SMa1927at 1096.795 kb on - strand, within SMa1927at 1096.795 kb on - strand, within SMa1927at 1096.851 kb on + strand, within SMa1927at 1097.066 kb on + strandat 1097.067 kb on - strandat 1097.191 kb on - strandat 1097.202 kb on + strandat 1097.203 kb on - strandat 1097.264 kb on + strandat 1097.264 kb on + strandat 1097.264 kb on + strandat 1097.265 kb on - strandat 1097.284 kb on - strandat 1097.331 kb on - strandat 1097.524 kb on + strandat 1097.570 kb on + strandat 1097.570 kb on + strandat 1097.571 kb on - strandat 1097.672 kb on - strand, within SMa1929at 1097.672 kb on - strand, within SMa1929at 1097.718 kb on - strand, within SMa1929at 1097.877 kb on + strand, within SMa1929at 1097.877 kb on + strand, within SMa1929at 1097.878 kb on - strand, within SMa1929at 1097.878 kb on - strand, within SMa1929at 1097.897 kb on - strand, within SMa1929at 1097.897 kb on - strand, within SMa1929at 1098.006 kb on + strand, within SMa1929

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Per-strain Table

Position Strand Gene LocusTag Fraction Mannobiose (C)
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1,095,579 - SMa1924 0.83 +0.2
1,095,670 + -0.4
1,095,718 - -0.3
1,095,806 - -0.6
1,095,850 + -0.3
1,095,906 + +0.7
1,095,907 - +0.6
1,095,966 + -0.6
1,095,967 - -0.0
1,095,967 - -0.4
1,096,007 - +3.0
1,096,032 - -1.3
1,096,309 - SMa1927 0.28 -0.4
1,096,510 + SMa1927 0.49 -0.9
1,096,510 + SMa1927 0.49 -0.3
1,096,510 + SMa1927 0.49 -0.8
1,096,510 + +1.0
1,096,511 - SMa1927 0.49 +1.2
1,096,539 - -0.0
1,096,590 + SMa1927 0.57 -1.5
1,096,590 + SMa1927 0.57 -1.8
1,096,591 - SMa1927 0.57 -1.2
1,096,792 + SMa1927 0.77 -0.3
1,096,792 + SMa1927 0.77 -0.3
1,096,793 - SMa1927 0.77 -0.2
1,096,793 - SMa1927 0.77 +0.2
1,096,794 + SMa1927 0.77 -0.6
1,096,795 - SMa1927 0.77 +0.2
1,096,795 - SMa1927 0.77 +0.0
1,096,851 + SMa1927 0.83 -0.4
1,097,066 + -1.8
1,097,067 - +0.0
1,097,191 - -0.4
1,097,202 + +0.1
1,097,203 - -0.5
1,097,264 + -0.3
1,097,264 + -0.3
1,097,264 + -0.2
1,097,265 - -1.2
1,097,284 - +0.3
1,097,331 - -0.1
1,097,524 + +0.1
1,097,570 + +0.5
1,097,570 + -0.1
1,097,571 - +0.4
1,097,672 - SMa1929 0.12 -1.6
1,097,672 - SMa1929 0.12 -0.1
1,097,718 - SMa1929 0.21 -1.3
1,097,877 + SMa1929 0.52 +0.0
1,097,877 + SMa1929 0.52 -0.2
1,097,878 - SMa1929 0.52 +0.2
1,097,878 - SMa1929 0.52 -0.0
1,097,897 - SMa1929 0.56 +0.8
1,097,897 - SMa1929 0.56 -0.2
1,098,006 + SMa1929 0.77 +1.2

Or see this region's nucleotide sequence