Experiment: Mannobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1924 and SMa1927 are separated by 336 nucleotides SMa1927 and SMa1929 are separated by 592 nucleotides
SMa1924: SMa1924 - hypothetical protein, at 1,095,016 to 1,095,690
SMa1924
SMa1927: SMa1927 - hypothetical protein, at 1,096,027 to 1,097,019
SMa1927
SMa1929: SMa1929 - hypothetical protein, at 1,097,612 to 1,098,121
SMa1929
Position (kb)
1096
1097
1098 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1095.579 kb on - strand, within SMa1924 at 1095.670 kb on + strand at 1095.718 kb on - strand at 1095.806 kb on - strand at 1095.850 kb on + strand at 1095.906 kb on + strand at 1095.907 kb on - strand at 1095.966 kb on + strand at 1095.967 kb on - strand at 1095.967 kb on - strand at 1096.007 kb on - strand at 1096.032 kb on - strand at 1096.309 kb on - strand, within SMa1927 at 1096.510 kb on + strand, within SMa1927 at 1096.510 kb on + strand, within SMa1927 at 1096.510 kb on + strand, within SMa1927 at 1096.510 kb on + strand at 1096.511 kb on - strand, within SMa1927 at 1096.539 kb on - strand at 1096.590 kb on + strand, within SMa1927 at 1096.590 kb on + strand, within SMa1927 at 1096.591 kb on - strand, within SMa1927 at 1096.792 kb on + strand, within SMa1927 at 1096.792 kb on + strand, within SMa1927 at 1096.793 kb on - strand, within SMa1927 at 1096.793 kb on - strand, within SMa1927 at 1096.794 kb on + strand, within SMa1927 at 1096.795 kb on - strand, within SMa1927 at 1096.795 kb on - strand, within SMa1927 at 1096.851 kb on + strand, within SMa1927 at 1097.066 kb on + strand at 1097.067 kb on - strand at 1097.191 kb on - strand at 1097.202 kb on + strand at 1097.203 kb on - strand at 1097.264 kb on + strand at 1097.264 kb on + strand at 1097.264 kb on + strand at 1097.265 kb on - strand at 1097.284 kb on - strand at 1097.331 kb on - strand at 1097.524 kb on + strand at 1097.570 kb on + strand at 1097.570 kb on + strand at 1097.571 kb on - strand at 1097.672 kb on - strand, within SMa1929 at 1097.672 kb on - strand, within SMa1929 at 1097.718 kb on - strand, within SMa1929 at 1097.877 kb on + strand, within SMa1929 at 1097.877 kb on + strand, within SMa1929 at 1097.878 kb on - strand, within SMa1929 at 1097.878 kb on - strand, within SMa1929 at 1097.897 kb on - strand, within SMa1929 at 1097.897 kb on - strand, within SMa1929 at 1098.006 kb on + strand, within SMa1929
Per-strain Table
Position Strand Gene LocusTag Fraction Mannobiose (C) remove 1,095,579 - SMa1924 0.83 +0.2 1,095,670 + -0.4 1,095,718 - -0.3 1,095,806 - -0.6 1,095,850 + -0.3 1,095,906 + +0.7 1,095,907 - +0.6 1,095,966 + -0.6 1,095,967 - -0.0 1,095,967 - -0.4 1,096,007 - +3.0 1,096,032 - -1.3 1,096,309 - SMa1927 0.28 -0.4 1,096,510 + SMa1927 0.49 -0.9 1,096,510 + SMa1927 0.49 -0.3 1,096,510 + SMa1927 0.49 -0.8 1,096,510 + +1.0 1,096,511 - SMa1927 0.49 +1.2 1,096,539 - -0.0 1,096,590 + SMa1927 0.57 -1.5 1,096,590 + SMa1927 0.57 -1.8 1,096,591 - SMa1927 0.57 -1.2 1,096,792 + SMa1927 0.77 -0.3 1,096,792 + SMa1927 0.77 -0.3 1,096,793 - SMa1927 0.77 -0.2 1,096,793 - SMa1927 0.77 +0.2 1,096,794 + SMa1927 0.77 -0.6 1,096,795 - SMa1927 0.77 +0.2 1,096,795 - SMa1927 0.77 +0.0 1,096,851 + SMa1927 0.83 -0.4 1,097,066 + -1.8 1,097,067 - +0.0 1,097,191 - -0.4 1,097,202 + +0.1 1,097,203 - -0.5 1,097,264 + -0.3 1,097,264 + -0.3 1,097,264 + -0.2 1,097,265 - -1.2 1,097,284 - +0.3 1,097,331 - -0.1 1,097,524 + +0.1 1,097,570 + +0.5 1,097,570 + -0.1 1,097,571 - +0.4 1,097,672 - SMa1929 0.12 -1.6 1,097,672 - SMa1929 0.12 -0.1 1,097,718 - SMa1929 0.21 -1.3 1,097,877 + SMa1929 0.52 +0.0 1,097,877 + SMa1929 0.52 -0.2 1,097,878 - SMa1929 0.52 +0.2 1,097,878 - SMa1929 0.52 -0.0 1,097,897 - SMa1929 0.56 +0.8 1,097,897 - SMa1929 0.56 -0.2 1,098,006 + SMa1929 0.77 +1.2
Or see this region's nucleotide sequence