Experiment: Mannobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1550 and SMa1552 are separated by 153 nucleotides SMa1552 and SMa1554 overlap by 4 nucleotides SMa1554 and SMa1556 overlap by 68 nucleotides
SMa1550: SMa1550 - Response regulator, at 857,628 to 858,311
SMa1550
SMa1552: SMa1552 - chemotaxis protein CheR, at 858,465 to 859,826
SMa1552
SMa1554: SMa1554 - chemotaxis protein, at 859,823 to 860,491
SMa1554
SMa1556: SMa1556 - Methyl-accepting chemotaxis protein, at 860,424 to 862,109
SMa1556
Position (kb) 858
859
860 Strain fitness (log2 ratio) -2
-1
0
1
2 at 857.472 kb on - strand at 857.472 kb on - strand at 857.478 kb on - strand at 857.563 kb on + strand at 857.622 kb on - strand at 857.627 kb on - strand at 857.651 kb on + strand at 857.652 kb on - strand at 857.718 kb on - strand, within SMa1550 at 857.726 kb on + strand, within SMa1550 at 857.940 kb on + strand, within SMa1550 at 857.941 kb on - strand, within SMa1550 at 858.009 kb on + strand, within SMa1550 at 858.098 kb on + strand, within SMa1550 at 858.099 kb on - strand, within SMa1550 at 858.149 kb on - strand, within SMa1550 at 858.149 kb on - strand, within SMa1550 at 858.149 kb on - strand, within SMa1550 at 858.149 kb on - strand, within SMa1550 at 858.226 kb on + strand, within SMa1550 at 858.226 kb on + strand, within SMa1550 at 858.227 kb on - strand, within SMa1550 at 858.227 kb on - strand, within SMa1550 at 858.227 kb on - strand, within SMa1550 at 858.309 kb on + strand at 858.309 kb on + strand at 858.310 kb on - strand at 858.322 kb on + strand at 858.334 kb on + strand at 858.352 kb on - strand at 858.375 kb on - strand at 858.395 kb on + strand at 858.395 kb on + strand at 858.395 kb on + strand at 858.395 kb on + strand at 858.396 kb on - strand at 858.715 kb on + strand, within SMa1552 at 858.715 kb on + strand, within SMa1552 at 858.716 kb on - strand, within SMa1552 at 858.810 kb on + strand, within SMa1552 at 858.826 kb on + strand, within SMa1552 at 858.826 kb on + strand, within SMa1552 at 858.827 kb on - strand, within SMa1552 at 858.827 kb on - strand, within SMa1552 at 859.116 kb on + strand, within SMa1552 at 859.221 kb on + strand, within SMa1552 at 859.221 kb on + strand, within SMa1552 at 859.292 kb on + strand, within SMa1552 at 859.292 kb on + strand, within SMa1552 at 859.293 kb on - strand, within SMa1552 at 859.597 kb on - strand, within SMa1552 at 859.597 kb on - strand, within SMa1552 at 859.630 kb on + strand, within SMa1552 at 859.631 kb on - strand, within SMa1552 at 859.631 kb on - strand, within SMa1552 at 859.631 kb on - strand, within SMa1552 at 859.631 kb on - strand, within SMa1552 at 859.706 kb on - strand at 859.796 kb on - strand at 859.883 kb on - strand at 859.883 kb on - strand at 859.897 kb on - strand, within SMa1554 at 859.897 kb on - strand, within SMa1554 at 859.949 kb on + strand, within SMa1554 at 859.949 kb on + strand, within SMa1554 at 859.949 kb on + strand, within SMa1554 at 859.950 kb on - strand, within SMa1554 at 860.067 kb on - strand, within SMa1554 at 860.079 kb on + strand, within SMa1554 at 860.139 kb on - strand, within SMa1554 at 860.139 kb on - strand, within SMa1554 at 860.489 kb on + strand at 860.496 kb on + strand at 860.496 kb on + strand at 860.496 kb on + strand at 860.524 kb on + strand at 860.524 kb on + strand at 860.643 kb on + strand, within SMa1556 at 860.644 kb on - strand, within SMa1556 at 860.644 kb on - strand, within SMa1556 at 860.644 kb on - strand, within SMa1556 at 860.644 kb on - strand, within SMa1556 at 860.694 kb on - strand, within SMa1556
Per-strain Table
Position Strand Gene LocusTag Fraction Mannobiose (C) remove 857,472 - -0.3 857,472 - +0.7 857,478 - -0.6 857,563 + +0.6 857,622 - -0.1 857,627 - -1.3 857,651 + +0.2 857,652 - +0.2 857,718 - SMa1550 0.13 -0.4 857,726 + SMa1550 0.14 -0.7 857,940 + SMa1550 0.46 +0.3 857,941 - SMa1550 0.46 +0.3 858,009 + SMa1550 0.56 +0.2 858,098 + SMa1550 0.69 +1.1 858,099 - SMa1550 0.69 +0.1 858,149 - SMa1550 0.76 -0.1 858,149 - SMa1550 0.76 +0.3 858,149 - SMa1550 0.76 +0.3 858,149 - SMa1550 0.76 -0.5 858,226 + SMa1550 0.87 -0.6 858,226 + SMa1550 0.87 +0.8 858,227 - SMa1550 0.88 +0.6 858,227 - SMa1550 0.88 +0.1 858,227 - SMa1550 0.88 -0.0 858,309 + -0.3 858,309 + -0.2 858,310 - -0.5 858,322 + +0.9 858,334 + +1.9 858,352 - +1.1 858,375 - -0.2 858,395 + +0.3 858,395 + -0.0 858,395 + -0.5 858,395 + +0.6 858,396 - -0.1 858,715 + SMa1552 0.18 -0.3 858,715 + SMa1552 0.18 +0.5 858,716 - SMa1552 0.18 -0.6 858,810 + SMa1552 0.25 +1.1 858,826 + SMa1552 0.27 +0.1 858,826 + SMa1552 0.27 -0.1 858,827 - SMa1552 0.27 -0.5 858,827 - SMa1552 0.27 -0.1 859,116 + SMa1552 0.48 +0.5 859,221 + SMa1552 0.56 -1.8 859,221 + SMa1552 0.56 -0.1 859,292 + SMa1552 0.61 -0.8 859,292 + SMa1552 0.61 +0.6 859,293 - SMa1552 0.61 -0.3 859,597 - SMa1552 0.83 -2.2 859,597 - SMa1552 0.83 +0.0 859,630 + SMa1552 0.86 -0.3 859,631 - SMa1552 0.86 -0.7 859,631 - SMa1552 0.86 +0.2 859,631 - SMa1552 0.86 -0.9 859,631 - SMa1552 0.86 +0.6 859,706 - +0.5 859,796 - -0.6 859,883 - +0.6 859,883 - -0.8 859,897 - SMa1554 0.11 +1.2 859,897 - SMa1554 0.11 +1.1 859,949 + SMa1554 0.19 +0.0 859,949 + SMa1554 0.19 +0.3 859,949 + SMa1554 0.19 +0.3 859,950 - SMa1554 0.19 -0.4 860,067 - SMa1554 0.36 +0.1 860,079 + SMa1554 0.38 -0.0 860,139 - SMa1554 0.47 -0.3 860,139 - SMa1554 0.47 +0.9 860,489 + +0.1 860,496 + +0.4 860,496 + -0.1 860,496 + -0.2 860,524 + -0.8 860,524 + -0.8 860,643 + SMa1556 0.13 +1.1 860,644 - SMa1556 0.13 +0.0 860,644 - SMa1556 0.13 +0.4 860,644 - SMa1556 0.13 -1.5 860,644 - SMa1556 0.13 +2.1 860,694 - SMa1556 0.16 -0.1
Or see this region's nucleotide sequence