Experiment: Mannobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0985 and SMa0988 are separated by 26 nucleotides SMa0988 and SMa0990 are separated by 657 nucleotides SMa0990 and SMa0992 are separated by 67 nucleotides SMa0992 and SMa5007 are separated by 56 nucleotides
SMa0985: SMa0985 - LysR family transcriptional regulator, at 547,525 to 548,370
SMa0985
SMa0988: SMa0988 - hypothetical protein, at 548,397 to 548,690
SMa0988
SMa0990: SMa0990 - hypothetical protein, at 549,348 to 549,827
SMa0990
SMa0992: SMa0992 - hypothetical protein, at 549,895 to 550,287
SMa0992
SMa5007: SMa5007 - transcriptional regulator, at 550,344 to 550,724
SMa5007
Position (kb) 549
550 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 548.437 kb on - strand, within SMa0988 at 548.492 kb on + strand, within SMa0988 at 548.493 kb on - strand, within SMa0988 at 548.510 kb on + strand, within SMa0988 at 548.510 kb on + strand, within SMa0988 at 548.510 kb on + strand, within SMa0988 at 548.510 kb on + strand, within SMa0988 at 548.514 kb on + strand, within SMa0988 at 548.522 kb on + strand, within SMa0988 at 548.523 kb on - strand, within SMa0988 at 548.523 kb on - strand at 548.608 kb on - strand, within SMa0988 at 548.660 kb on + strand, within SMa0988 at 548.660 kb on + strand, within SMa0988 at 548.661 kb on - strand at 548.661 kb on - strand at 548.674 kb on - strand at 548.724 kb on + strand at 548.725 kb on - strand at 548.919 kb on - strand at 548.919 kb on - strand at 549.238 kb on + strand at 549.238 kb on + strand at 549.238 kb on + strand at 549.239 kb on - strand at 549.330 kb on + strand at 549.331 kb on - strand at 549.331 kb on - strand at 549.331 kb on - strand at 549.627 kb on + strand, within SMa0990 at 549.661 kb on + strand, within SMa0990 at 549.734 kb on + strand, within SMa0990 at 549.734 kb on + strand, within SMa0990 at 549.735 kb on - strand, within SMa0990 at 549.753 kb on + strand, within SMa0990 at 549.754 kb on - strand, within SMa0990 at 549.821 kb on - strand at 549.821 kb on - strand at 550.008 kb on + strand, within SMa0992 at 550.241 kb on - strand, within SMa0992 at 550.241 kb on - strand, within SMa0992 at 550.281 kb on + strand at 550.282 kb on - strand at 550.285 kb on + strand at 550.286 kb on - strand at 550.286 kb on - strand at 550.286 kb on - strand at 550.295 kb on + strand at 550.296 kb on - strand at 550.339 kb on - strand at 550.398 kb on + strand, within SMa5007 at 550.398 kb on + strand, within SMa5007 at 550.399 kb on - strand, within SMa5007 at 550.399 kb on - strand, within SMa5007 at 550.399 kb on - strand, within SMa5007 at 550.399 kb on - strand, within SMa5007 at 550.498 kb on + strand, within SMa5007 at 550.558 kb on + strand, within SMa5007
Per-strain Table
Position Strand Gene LocusTag Fraction Mannobiose (C) remove 548,437 - SMa0988 0.14 -0.2 548,492 + SMa0988 0.32 -0.0 548,493 - SMa0988 0.33 +0.7 548,510 + SMa0988 0.38 +0.3 548,510 + SMa0988 0.38 +0.2 548,510 + SMa0988 0.38 +0.1 548,510 + SMa0988 0.38 +0.1 548,514 + SMa0988 0.40 -0.5 548,522 + SMa0988 0.43 -0.1 548,523 - SMa0988 0.43 -0.1 548,523 - -0.7 548,608 - SMa0988 0.72 -0.6 548,660 + SMa0988 0.89 +1.2 548,660 + SMa0988 0.89 -0.1 548,661 - +0.3 548,661 - +0.3 548,674 - -0.3 548,724 + -0.4 548,725 - +0.4 548,919 - -0.2 548,919 - -0.9 549,238 + -0.3 549,238 + -0.0 549,238 + +0.1 549,239 - -0.9 549,330 + +0.0 549,331 - -0.0 549,331 - +0.1 549,331 - -0.8 549,627 + SMa0990 0.58 +0.7 549,661 + SMa0990 0.65 +0.3 549,734 + SMa0990 0.80 -3.0 549,734 + SMa0990 0.80 +0.4 549,735 - SMa0990 0.81 +0.2 549,753 + SMa0990 0.84 +0.8 549,754 - SMa0990 0.85 +0.1 549,821 - +0.1 549,821 - -1.2 550,008 + SMa0992 0.29 -0.5 550,241 - SMa0992 0.88 -0.4 550,241 - SMa0992 0.88 +1.2 550,281 + +0.0 550,282 - -0.2 550,285 + -0.7 550,286 - -0.1 550,286 - +0.2 550,286 - +1.2 550,295 + +0.1 550,296 - +0.2 550,339 - +0.2 550,398 + SMa5007 0.14 +0.5 550,398 + SMa5007 0.14 -0.1 550,399 - SMa5007 0.14 -0.4 550,399 - SMa5007 0.14 -1.0 550,399 - SMa5007 0.14 -0.8 550,399 - SMa5007 0.14 +0.4 550,498 + SMa5007 0.40 +0.2 550,558 + SMa5007 0.56 -0.1
Or see this region's nucleotide sequence