Strain Fitness in Sinorhizobium meliloti 1021 around SMa0464

Experiment: Mannobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0462 and SMa0464 are separated by 214 nucleotidesSMa0464 and SMa0466 are separated by 402 nucleotides SMa0462: SMa0462 - hypothetical protein, at 246,386 to 248,227 SMa0462 SMa0464: SMa0464 - guanylate cyclase, at 248,442 to 251,618 SMa0464 SMa0466: SMa0466 - ABC transporter substrate-binding protein, at 252,021 to 253,625 SMa0466 Position (kb) 248 249 250 251 252Strain fitness (log2 ratio) -1 0 1 2at 247.468 kb on + strand, within SMa0462at 247.480 kb on - strand, within SMa0462at 247.480 kb on - strand, within SMa0462at 247.493 kb on + strand, within SMa0462at 247.494 kb on - strand, within SMa0462at 247.494 kb on - strand, within SMa0462at 247.494 kb on - strand, within SMa0462at 247.494 kb on - strand, within SMa0462at 247.632 kb on + strand, within SMa0462at 247.650 kb on - strand, within SMa0462at 247.804 kb on - strand, within SMa0462at 247.804 kb on - strand, within SMa0462at 247.855 kb on - strand, within SMa0462at 247.899 kb on - strand, within SMa0462at 247.980 kb on - strand, within SMa0462at 248.089 kb on + strandat 248.090 kb on - strandat 248.156 kb on - strandat 248.164 kb on + strandat 248.357 kb on + strandat 248.358 kb on - strandat 248.435 kb on - strandat 248.768 kb on + strand, within SMa0464at 249.067 kb on - strand, within SMa0464at 249.067 kb on - strand, within SMa0464at 249.193 kb on + strand, within SMa0464at 249.196 kb on + strand, within SMa0464at 249.286 kb on - strand, within SMa0464at 249.585 kb on + strand, within SMa0464at 249.733 kb on + strand, within SMa0464at 249.757 kb on + strandat 249.758 kb on - strand, within SMa0464at 249.865 kb on + strand, within SMa0464at 249.865 kb on + strand, within SMa0464at 249.901 kb on + strand, within SMa0464at 249.902 kb on - strand, within SMa0464at 249.942 kb on + strand, within SMa0464at 249.942 kb on + strand, within SMa0464at 249.943 kb on - strand, within SMa0464at 249.943 kb on - strand, within SMa0464at 250.029 kb on + strand, within SMa0464at 250.029 kb on + strandat 250.030 kb on - strand, within SMa0464at 250.079 kb on + strand, within SMa0464at 250.079 kb on + strand, within SMa0464at 250.079 kb on + strand, within SMa0464at 250.079 kb on + strand, within SMa0464at 250.079 kb on + strand, within SMa0464at 250.080 kb on - strand, within SMa0464at 250.080 kb on - strand, within SMa0464at 250.080 kb on - strand, within SMa0464at 250.118 kb on + strand, within SMa0464at 250.178 kb on + strand, within SMa0464at 250.179 kb on - strand, within SMa0464at 250.179 kb on - strand, within SMa0464at 250.179 kb on - strand, within SMa0464at 250.182 kb on + strand, within SMa0464at 250.182 kb on + strand, within SMa0464at 250.182 kb on + strand, within SMa0464at 250.183 kb on - strand, within SMa0464at 250.183 kb on - strand, within SMa0464at 250.183 kb on - strand, within SMa0464at 250.389 kb on - strand, within SMa0464at 250.536 kb on + strand, within SMa0464at 250.537 kb on - strand, within SMa0464at 250.617 kb on + strand, within SMa0464at 250.618 kb on - strand, within SMa0464at 250.747 kb on + strand, within SMa0464at 250.751 kb on + strand, within SMa0464at 250.887 kb on - strand, within SMa0464at 250.905 kb on + strand, within SMa0464at 250.905 kb on + strand, within SMa0464at 251.059 kb on - strand, within SMa0464at 251.319 kb on + strandat 251.381 kb on - strandat 251.435 kb on - strandat 251.435 kb on - strandat 251.496 kb on + strandat 251.497 kb on - strandat 251.705 kb on + strandat 251.706 kb on - strandat 251.706 kb on - strandat 251.706 kb on - strandat 251.787 kb on + strandat 251.788 kb on - strandat 251.788 kb on - strandat 251.820 kb on + strandat 251.820 kb on + strandat 251.844 kb on + strandat 251.844 kb on + strandat 251.844 kb on + strandat 251.844 kb on + strandat 251.845 kb on - strandat 251.845 kb on - strandat 251.845 kb on - strandat 251.845 kb on - strandat 251.848 kb on + strandat 251.849 kb on - strandat 252.161 kb on + strandat 252.162 kb on - strandat 252.162 kb on - strandat 252.162 kb on - strandat 252.204 kb on + strand, within SMa0466at 252.205 kb on - strand, within SMa0466at 252.205 kb on - strand, within SMa0466at 252.205 kb on - strand, within SMa0466at 252.244 kb on + strand, within SMa0466at 252.316 kb on + strand, within SMa0466at 252.377 kb on + strand, within SMa0466at 252.377 kb on + strand, within SMa0466at 252.377 kb on + strand, within SMa0466at 252.377 kb on + strand, within SMa0466at 252.378 kb on - strand, within SMa0466at 252.397 kb on - strand, within SMa0466at 252.439 kb on - strand, within SMa0466at 252.534 kb on - strand, within SMa0466at 252.534 kb on - strand, within SMa0466at 252.534 kb on - strand, within SMa0466at 252.534 kb on - strand, within SMa0466

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Per-strain Table

Position Strand Gene LocusTag Fraction Mannobiose (C)
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247,468 + SMa0462 0.59 +0.1
247,480 - SMa0462 0.59 -0.1
247,480 - SMa0462 0.59 +0.1
247,493 + SMa0462 0.60 -0.1
247,494 - SMa0462 0.60 -0.1
247,494 - SMa0462 0.60 +0.1
247,494 - SMa0462 0.60 -0.0
247,494 - SMa0462 0.60 -0.7
247,632 + SMa0462 0.68 -0.5
247,650 - SMa0462 0.69 +0.3
247,804 - SMa0462 0.77 +0.7
247,804 - SMa0462 0.77 -1.0
247,855 - SMa0462 0.80 -0.2
247,899 - SMa0462 0.82 -0.2
247,980 - SMa0462 0.87 -0.6
248,089 + -0.0
248,090 - -0.1
248,156 - -0.7
248,164 + +1.6
248,357 + -0.3
248,358 - +0.5
248,435 - -0.8
248,768 + SMa0464 0.10 -0.1
249,067 - SMa0464 0.20 +0.0
249,067 - SMa0464 0.20 -0.5
249,193 + SMa0464 0.24 +0.1
249,196 + SMa0464 0.24 -0.4
249,286 - SMa0464 0.27 -1.3
249,585 + SMa0464 0.36 -0.4
249,733 + SMa0464 0.41 -0.7
249,757 + -0.2
249,758 - SMa0464 0.41 -0.1
249,865 + SMa0464 0.45 -0.3
249,865 + SMa0464 0.45 -0.5
249,901 + SMa0464 0.46 +0.3
249,902 - SMa0464 0.46 +0.1
249,942 + SMa0464 0.47 -0.1
249,942 + SMa0464 0.47 +0.3
249,943 - SMa0464 0.47 -0.9
249,943 - SMa0464 0.47 +0.2
250,029 + SMa0464 0.50 +0.1
250,029 + +0.4
250,030 - SMa0464 0.50 +1.3
250,079 + SMa0464 0.52 +0.1
250,079 + SMa0464 0.52 -0.4
250,079 + SMa0464 0.52 -0.0
250,079 + SMa0464 0.52 -0.0
250,079 + SMa0464 0.52 -0.5
250,080 - SMa0464 0.52 +0.8
250,080 - SMa0464 0.52 -1.6
250,080 - SMa0464 0.52 -0.5
250,118 + SMa0464 0.53 -0.6
250,178 + SMa0464 0.55 -0.5
250,179 - SMa0464 0.55 -1.6
250,179 - SMa0464 0.55 -0.0
250,179 - SMa0464 0.55 -0.5
250,182 + SMa0464 0.55 +0.1
250,182 + SMa0464 0.55 -0.0
250,182 + SMa0464 0.55 -0.5
250,183 - SMa0464 0.55 +1.3
250,183 - SMa0464 0.55 -0.7
250,183 - SMa0464 0.55 +0.3
250,389 - SMa0464 0.61 +0.0
250,536 + SMa0464 0.66 +0.3
250,537 - SMa0464 0.66 +0.0
250,617 + SMa0464 0.68 +0.1
250,618 - SMa0464 0.68 +0.5
250,747 + SMa0464 0.73 -0.5
250,751 + SMa0464 0.73 +0.2
250,887 - SMa0464 0.77 +0.5
250,905 + SMa0464 0.78 -0.2
250,905 + SMa0464 0.78 -0.1
251,059 - SMa0464 0.82 -0.2
251,319 + -0.4
251,381 - +0.1
251,435 - -0.0
251,435 - -0.3
251,496 + +2.7
251,497 - -0.7
251,705 + +0.2
251,706 - -0.1
251,706 - -1.1
251,706 - +0.2
251,787 + +0.4
251,788 - +0.7
251,788 - -0.0
251,820 + +0.4
251,820 + -0.5
251,844 + +1.3
251,844 + +0.3
251,844 + +1.5
251,844 + -0.6
251,845 - +0.0
251,845 - +0.4
251,845 - -0.2
251,845 - +0.3
251,848 + +0.9
251,849 - +0.6
252,161 + -0.5
252,162 - +0.1
252,162 - -1.0
252,162 - -0.1
252,204 + SMa0466 0.11 +0.1
252,205 - SMa0466 0.11 +0.2
252,205 - SMa0466 0.11 -0.4
252,205 - SMa0466 0.11 +1.1
252,244 + SMa0466 0.14 -0.1
252,316 + SMa0466 0.18 +1.6
252,377 + SMa0466 0.22 +0.1
252,377 + SMa0466 0.22 -0.1
252,377 + SMa0466 0.22 -0.1
252,377 + SMa0466 0.22 +0.8
252,378 - SMa0466 0.22 -0.0
252,397 - SMa0466 0.23 +0.3
252,439 - SMa0466 0.26 +0.5
252,534 - SMa0466 0.32 -0.2
252,534 - SMa0466 0.32 -0.9
252,534 - SMa0466 0.32 -0.2
252,534 - SMa0466 0.32 -0.1

Or see this region's nucleotide sequence