Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21283

Experiment: Mannobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21281 and SM_b22012 are separated by 272 nucleotidesSM_b22012 and SM_b21283 are separated by 93 nucleotidesSM_b21283 and SM_b21284 are separated by 9 nucleotides SM_b21281: SM_b21281 - xanthine uracil permease, at 855,725 to 857,098 _b21281 SM_b22012: SM_b22012 - hypothetical protein, at 857,371 to 857,778 _b22012 SM_b21283: SM_b21283 - allantoicase, at 857,872 to 858,894 _b21283 SM_b21284: SM_b21284 - uricase, at 858,904 to 860,319 _b21284 Position (kb) 857 858 859Strain fitness (log2 ratio) -3 -2 -1 0 1at 856.989 kb on + strandat 856.989 kb on + strandat 856.994 kb on + strandat 856.995 kb on - strandat 856.995 kb on - strandat 856.995 kb on - strandat 857.201 kb on + strandat 857.201 kb on + strandat 857.202 kb on - strandat 857.202 kb on - strandat 857.202 kb on - strandat 857.202 kb on - strandat 857.268 kb on - strandat 857.596 kb on + strand, within SM_b22012at 857.658 kb on - strand, within SM_b22012at 857.674 kb on + strand, within SM_b22012at 857.675 kb on - strand, within SM_b22012at 857.675 kb on - strand, within SM_b22012at 857.675 kb on - strand, within SM_b22012at 857.676 kb on + strand, within SM_b22012at 857.676 kb on + strand, within SM_b22012at 857.676 kb on + strand, within SM_b22012at 857.676 kb on + strand, within SM_b22012at 857.677 kb on - strand, within SM_b22012at 857.677 kb on - strand, within SM_b22012at 857.677 kb on - strand, within SM_b22012at 857.677 kb on - strand, within SM_b22012at 857.733 kb on + strand, within SM_b22012at 857.733 kb on + strand, within SM_b22012at 857.733 kb on + strand, within SM_b22012at 857.825 kb on - strandat 857.825 kb on - strandat 857.829 kb on + strandat 857.993 kb on + strand, within SM_b21283at 857.994 kb on - strand, within SM_b21283at 858.255 kb on + strand, within SM_b21283at 858.297 kb on - strand, within SM_b21283at 858.456 kb on - strand, within SM_b21283at 858.456 kb on - strand, within SM_b21283at 858.594 kb on - strand, within SM_b21283at 858.669 kb on - strand, within SM_b21283at 858.770 kb on - strand, within SM_b21283at 858.774 kb on + strand, within SM_b21283at 858.774 kb on + strand, within SM_b21283at 858.775 kb on - strand, within SM_b21283at 858.775 kb on - strand, within SM_b21283at 859.357 kb on + strand, within SM_b21284at 859.357 kb on + strand, within SM_b21284at 859.430 kb on + strand, within SM_b21284at 859.446 kb on - strand, within SM_b21284at 859.499 kb on + strand, within SM_b21284at 859.499 kb on + strand, within SM_b21284at 859.500 kb on - strand, within SM_b21284at 859.632 kb on - strand, within SM_b21284at 859.632 kb on - strand, within SM_b21284at 859.703 kb on + strand, within SM_b21284at 859.703 kb on + strand, within SM_b21284at 859.764 kb on - strand, within SM_b21284at 859.779 kb on - strand, within SM_b21284at 859.838 kb on + strand, within SM_b21284at 859.839 kb on - strand, within SM_b21284

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Per-strain Table

Position Strand Gene LocusTag Fraction Mannobiose (C)
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856,989 + -0.4
856,989 + -0.0
856,994 + -0.1
856,995 - -0.1
856,995 - -0.3
856,995 - +0.1
857,201 + +0.1
857,201 + -1.6
857,202 - +1.3
857,202 - -0.3
857,202 - -0.1
857,202 - -0.1
857,268 - +0.4
857,596 + SM_b22012 0.55 -0.3
857,658 - SM_b22012 0.70 -0.4
857,674 + SM_b22012 0.74 -0.2
857,675 - SM_b22012 0.75 +0.0
857,675 - SM_b22012 0.75 -0.1
857,675 - SM_b22012 0.75 -1.0
857,676 + SM_b22012 0.75 -0.7
857,676 + SM_b22012 0.75 -0.2
857,676 + SM_b22012 0.75 +0.4
857,676 + SM_b22012 0.75 +0.8
857,677 - SM_b22012 0.75 -0.8
857,677 - SM_b22012 0.75 -0.5
857,677 - SM_b22012 0.75 +0.0
857,677 - SM_b22012 0.75 -0.0
857,733 + SM_b22012 0.89 +0.2
857,733 + SM_b22012 0.89 -0.3
857,733 + SM_b22012 0.89 -0.0
857,825 - -0.2
857,825 - +0.1
857,829 + +1.1
857,993 + SM_b21283 0.12 -0.1
857,994 - SM_b21283 0.12 -0.4
858,255 + SM_b21283 0.37 -1.4
858,297 - SM_b21283 0.42 -0.5
858,456 - SM_b21283 0.57 -0.4
858,456 - SM_b21283 0.57 -0.7
858,594 - SM_b21283 0.71 -3.2
858,669 - SM_b21283 0.78 -0.3
858,770 - SM_b21283 0.88 -0.0
858,774 + SM_b21283 0.88 -0.1
858,774 + SM_b21283 0.88 -0.6
858,775 - SM_b21283 0.88 -0.6
858,775 - SM_b21283 0.88 +0.7
859,357 + SM_b21284 0.32 +0.0
859,357 + SM_b21284 0.32 +0.0
859,430 + SM_b21284 0.37 +0.3
859,446 - SM_b21284 0.38 -0.2
859,499 + SM_b21284 0.42 -0.2
859,499 + SM_b21284 0.42 +0.2
859,500 - SM_b21284 0.42 +0.5
859,632 - SM_b21284 0.51 -0.3
859,632 - SM_b21284 0.51 -0.4
859,703 + SM_b21284 0.56 -0.3
859,703 + SM_b21284 0.56 -0.4
859,764 - SM_b21284 0.61 -0.4
859,779 - SM_b21284 0.62 -0.8
859,838 + SM_b21284 0.66 -0.5
859,839 - SM_b21284 0.66 -0.0

Or see this region's nucleotide sequence