Experiment: Mannobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20176 and SM_b20177 are separated by 173 nucleotides SM_b20177 and SM_b20178 are separated by 126 nucleotides SM_b20178 and SM_b20179 are separated by 1 nucleotides SM_b20179 and SM_b20180 are separated by 3 nucleotides
SM_b20176: SM_b20176 - hypothetical protein, at 194,208 to 194,753
_b20176
SM_b20177: SM_b20177 - hypothetical protein, at 194,927 to 195,448
_b20177
SM_b20178: SM_b20178 - hypothetical protein, at 195,575 to 196,762
_b20178
SM_b20179: SM_b20179 - hypothetical protein, at 196,764 to 197,738
_b20179
SM_b20180: SM_b20180 - hypothetical protein, at 197,742 to 198,221
_b20180
Position (kb) 195
196
197 Strain fitness (log2 ratio) -2
-1
0
1
2 at 194.652 kb on + strand, within SM_b20176 at 194.658 kb on + strand, within SM_b20176 at 194.658 kb on + strand, within SM_b20176 at 194.659 kb on - strand, within SM_b20176 at 194.659 kb on - strand, within SM_b20176 at 194.822 kb on - strand at 194.959 kb on - strand at 194.959 kb on - strand at 195.065 kb on + strand, within SM_b20177 at 195.070 kb on + strand, within SM_b20177 at 195.071 kb on - strand, within SM_b20177 at 195.108 kb on + strand, within SM_b20177 at 195.108 kb on + strand, within SM_b20177 at 195.295 kb on + strand, within SM_b20177 at 195.296 kb on - strand, within SM_b20177 at 195.298 kb on - strand, within SM_b20177 at 195.298 kb on - strand, within SM_b20177 at 195.345 kb on - strand, within SM_b20177 at 195.345 kb on - strand, within SM_b20177 at 195.482 kb on + strand at 195.483 kb on - strand at 195.491 kb on + strand at 195.492 kb on - strand at 195.514 kb on - strand at 195.524 kb on + strand at 195.794 kb on + strand, within SM_b20178 at 195.795 kb on - strand, within SM_b20178 at 195.900 kb on + strand, within SM_b20178 at 195.900 kb on + strand, within SM_b20178 at 195.901 kb on - strand, within SM_b20178 at 195.901 kb on - strand, within SM_b20178 at 195.901 kb on - strand, within SM_b20178 at 196.313 kb on + strand, within SM_b20178 at 196.313 kb on + strand, within SM_b20178 at 196.314 kb on - strand, within SM_b20178 at 196.466 kb on + strand, within SM_b20178 at 196.467 kb on - strand, within SM_b20178 at 196.467 kb on - strand, within SM_b20178 at 196.686 kb on - strand at 196.686 kb on - strand at 196.760 kb on + strand at 196.761 kb on - strand at 196.962 kb on + strand, within SM_b20179 at 196.963 kb on - strand, within SM_b20179 at 197.013 kb on + strand, within SM_b20179 at 197.014 kb on - strand at 197.016 kb on - strand, within SM_b20179 at 197.089 kb on - strand, within SM_b20179 at 197.089 kb on - strand, within SM_b20179 at 197.147 kb on - strand, within SM_b20179 at 197.147 kb on - strand, within SM_b20179 at 197.219 kb on + strand, within SM_b20179 at 197.220 kb on - strand, within SM_b20179 at 197.237 kb on + strand, within SM_b20179 at 197.237 kb on + strand, within SM_b20179 at 197.237 kb on + strand, within SM_b20179 at 197.238 kb on - strand, within SM_b20179 at 197.340 kb on + strand, within SM_b20179 at 197.341 kb on - strand, within SM_b20179 at 197.562 kb on + strand, within SM_b20179 at 197.562 kb on + strand, within SM_b20179 at 197.562 kb on + strand, within SM_b20179
Per-strain Table
Position Strand Gene LocusTag Fraction Mannobiose (C) remove 194,652 + SM_b20176 0.81 -0.6 194,658 + SM_b20176 0.82 -0.5 194,658 + SM_b20176 0.82 -0.0 194,659 - SM_b20176 0.83 +0.3 194,659 - SM_b20176 0.83 -2.4 194,822 - +1.5 194,959 - +0.8 194,959 - -0.3 195,065 + SM_b20177 0.26 -0.0 195,070 + SM_b20177 0.27 +0.4 195,071 - SM_b20177 0.28 +0.6 195,108 + SM_b20177 0.35 -0.7 195,108 + SM_b20177 0.35 +1.0 195,295 + SM_b20177 0.70 +1.1 195,296 - SM_b20177 0.71 +0.1 195,298 - SM_b20177 0.71 +0.2 195,298 - SM_b20177 0.71 -0.0 195,345 - SM_b20177 0.80 +1.1 195,345 - SM_b20177 0.80 -0.3 195,482 + -1.0 195,483 - -1.3 195,491 + -0.2 195,492 - +0.6 195,514 - -1.4 195,524 + +0.3 195,794 + SM_b20178 0.18 +0.8 195,795 - SM_b20178 0.19 -0.2 195,900 + SM_b20178 0.27 -0.1 195,900 + SM_b20178 0.27 -0.1 195,901 - SM_b20178 0.27 -0.5 195,901 - SM_b20178 0.27 -0.9 195,901 - SM_b20178 0.27 +0.0 196,313 + SM_b20178 0.62 +0.0 196,313 + SM_b20178 0.62 -1.4 196,314 - SM_b20178 0.62 -0.9 196,466 + SM_b20178 0.75 -0.8 196,467 - SM_b20178 0.75 -0.2 196,467 - SM_b20178 0.75 -0.7 196,686 - +0.2 196,686 - -0.6 196,760 + +0.9 196,761 - -0.4 196,962 + SM_b20179 0.20 -0.3 196,963 - SM_b20179 0.20 -0.5 197,013 + SM_b20179 0.26 -0.3 197,014 - -0.3 197,016 - SM_b20179 0.26 -0.3 197,089 - SM_b20179 0.33 -0.4 197,089 - SM_b20179 0.33 +0.1 197,147 - SM_b20179 0.39 +0.3 197,147 - SM_b20179 0.39 +0.6 197,219 + SM_b20179 0.47 +0.3 197,220 - SM_b20179 0.47 +0.4 197,237 + SM_b20179 0.49 +1.3 197,237 + SM_b20179 0.49 -0.3 197,237 + SM_b20179 0.49 -0.7 197,238 - SM_b20179 0.49 -0.4 197,340 + SM_b20179 0.59 +0.3 197,341 - SM_b20179 0.59 -0.8 197,562 + SM_b20179 0.82 -0.3 197,562 + SM_b20179 0.82 -0.6 197,562 + SM_b20179 0.82 +1.9
Or see this region's nucleotide sequence