Experiment: RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26385 and BWI76_RS26390 are separated by 256 nucleotides BWI76_RS26390 and BWI76_RS26395 overlap by 8 nucleotides BWI76_RS26395 and BWI76_RS26400 are separated by 2 nucleotides
BWI76_RS26385: BWI76_RS26385 - RNA polymerase sigma factor RpoH, at 5,462,206 to 5,463,060
_RS26385
BWI76_RS26390: BWI76_RS26390 - cell division protein FtsX, at 5,463,317 to 5,464,375
_RS26390
BWI76_RS26395: BWI76_RS26395 - cell division protein FtsE, at 5,464,368 to 5,465,036
_RS26395
BWI76_RS26400: BWI76_RS26400 - signal recognition particle-docking protein FtsY, at 5,465,039 to 5,466,553
_RS26400
Position (kb)
5463
5464
5465 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 5463.135 kb on - strand at 5463.164 kb on - strand at 5463.256 kb on + strand at 5463.441 kb on - strand, within BWI76_RS26390 at 5463.615 kb on - strand, within BWI76_RS26390 at 5463.904 kb on + strand, within BWI76_RS26390 at 5463.904 kb on + strand, within BWI76_RS26390 at 5463.986 kb on - strand, within BWI76_RS26390 at 5464.056 kb on + strand, within BWI76_RS26390 at 5464.491 kb on - strand, within BWI76_RS26395 at 5464.491 kb on - strand, within BWI76_RS26395 at 5464.767 kb on - strand, within BWI76_RS26395
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 5,463,135 - -1.2 5,463,164 - -0.6 5,463,256 + -0.8 5,463,441 - BWI76_RS26390 0.12 -4.1 5,463,615 - BWI76_RS26390 0.28 -3.8 5,463,904 + BWI76_RS26390 0.55 -1.5 5,463,904 + BWI76_RS26390 0.55 -0.5 5,463,986 - BWI76_RS26390 0.63 -3.4 5,464,056 + BWI76_RS26390 0.70 -3.3 5,464,491 - BWI76_RS26395 0.18 -3.3 5,464,491 - BWI76_RS26395 0.18 -1.7 5,464,767 - BWI76_RS26395 0.60 -3.7
Or see this region's nucleotide sequence