Experiment: RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS25625 and BWI76_RS25630 are separated by 21 nucleotides BWI76_RS25630 and BWI76_RS25635 overlap by 2 nucleotides BWI76_RS25635 and BWI76_RS25640 overlap by 25 nucleotides BWI76_RS25640 and BWI76_RS25645 overlap by 4 nucleotides BWI76_RS25645 and BWI76_RS25650 are separated by 3 nucleotides BWI76_RS25650 and BWI76_RS25655 are separated by 4 nucleotides
BWI76_RS25625: BWI76_RS25625 - hypothetical protein, at 5,325,446 to 5,325,651
_RS25625
BWI76_RS25630: BWI76_RS25630 - hypothetical protein, at 5,325,673 to 5,325,861
_RS25630
BWI76_RS25635: BWI76_RS25635 - gamma carbonic anhydrase family protein, at 5,325,860 to 5,326,414
_RS25635
BWI76_RS25640: BWI76_RS25640 - hypothetical protein, at 5,326,390 to 5,326,647
_RS25640
BWI76_RS25645: BWI76_RS25645 - shikimate dehydrogenase, at 5,326,644 to 5,327,462
_RS25645
BWI76_RS25650: BWI76_RS25650 - L-threonylcarbamoyladenylate synthase type 1 TsaC, at 5,327,466 to 5,328,038
_RS25650
BWI76_RS25655: BWI76_RS25655 - DNA topoisomerase type IA zn finger domain-containing protein, at 5,328,043 to 5,328,585
_RS25655
Position (kb) 5326
5327
5328 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5325.798 kb on - strand, within BWI76_RS25630 at 5325.807 kb on - strand, within BWI76_RS25630 at 5326.136 kb on - strand, within BWI76_RS25635 at 5326.136 kb on - strand, within BWI76_RS25635 at 5326.264 kb on + strand at 5326.278 kb on + strand, within BWI76_RS25635 at 5326.287 kb on - strand, within BWI76_RS25635 at 5326.342 kb on + strand, within BWI76_RS25635 at 5326.350 kb on - strand, within BWI76_RS25635 at 5326.403 kb on + strand at 5326.403 kb on + strand at 5326.406 kb on - strand at 5326.426 kb on - strand, within BWI76_RS25640 at 5326.426 kb on - strand, within BWI76_RS25640 at 5326.491 kb on + strand, within BWI76_RS25640 at 5326.533 kb on + strand, within BWI76_RS25640 at 5326.548 kb on - strand, within BWI76_RS25640 at 5326.565 kb on - strand, within BWI76_RS25640 at 5326.670 kb on - strand at 5326.891 kb on + strand, within BWI76_RS25645 at 5326.940 kb on - strand, within BWI76_RS25645 at 5327.040 kb on - strand, within BWI76_RS25645 at 5327.065 kb on - strand, within BWI76_RS25645 at 5327.139 kb on + strand, within BWI76_RS25645 at 5327.147 kb on + strand, within BWI76_RS25645 at 5327.147 kb on + strand, within BWI76_RS25645 at 5327.147 kb on - strand, within BWI76_RS25645 at 5327.193 kb on - strand, within BWI76_RS25645 at 5327.217 kb on + strand, within BWI76_RS25645 at 5327.217 kb on + strand, within BWI76_RS25645 at 5327.225 kb on - strand, within BWI76_RS25645 at 5327.301 kb on - strand, within BWI76_RS25645 at 5327.362 kb on - strand, within BWI76_RS25645 at 5328.405 kb on - strand, within BWI76_RS25655 at 5328.414 kb on - strand, within BWI76_RS25655
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 5,325,798 - BWI76_RS25630 0.66 -0.6 5,325,807 - BWI76_RS25630 0.71 -0.0 5,326,136 - BWI76_RS25635 0.50 -2.5 5,326,136 - BWI76_RS25635 0.50 -0.2 5,326,264 + +1.1 5,326,278 + BWI76_RS25635 0.75 +0.3 5,326,287 - BWI76_RS25635 0.77 -1.4 5,326,342 + BWI76_RS25635 0.87 +1.7 5,326,350 - BWI76_RS25635 0.88 +0.1 5,326,403 + +0.3 5,326,403 + +0.9 5,326,406 - +1.1 5,326,426 - BWI76_RS25640 0.14 +0.2 5,326,426 - BWI76_RS25640 0.14 -0.5 5,326,491 + BWI76_RS25640 0.39 +0.2 5,326,533 + BWI76_RS25640 0.55 -1.0 5,326,548 - BWI76_RS25640 0.61 +0.2 5,326,565 - BWI76_RS25640 0.68 +0.4 5,326,670 - -4.3 5,326,891 + BWI76_RS25645 0.30 +1.1 5,326,940 - BWI76_RS25645 0.36 +0.1 5,327,040 - BWI76_RS25645 0.48 +1.1 5,327,065 - BWI76_RS25645 0.51 -2.3 5,327,139 + BWI76_RS25645 0.60 -2.3 5,327,147 + BWI76_RS25645 0.61 -3.4 5,327,147 + BWI76_RS25645 0.61 -2.7 5,327,147 - BWI76_RS25645 0.61 -0.9 5,327,193 - BWI76_RS25645 0.67 -1.2 5,327,217 + BWI76_RS25645 0.70 -4.5 5,327,217 + BWI76_RS25645 0.70 -2.2 5,327,225 - BWI76_RS25645 0.71 -1.5 5,327,301 - BWI76_RS25645 0.80 -1.2 5,327,362 - BWI76_RS25645 0.88 -3.9 5,328,405 - BWI76_RS25655 0.67 -0.3 5,328,414 - BWI76_RS25655 0.68 -1.2
Or see this region's nucleotide sequence