Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS24970

Experiment: RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS24960 and BWI76_RS24965 overlap by 7 nucleotidesBWI76_RS24965 and BWI76_RS24970 are separated by 221 nucleotidesBWI76_RS24970 and BWI76_RS24975 are separated by 8 nucleotides BWI76_RS24960: BWI76_RS24960 - N-acetyltransferase, at 5,198,426 to 5,198,929 _RS24960 BWI76_RS24965: BWI76_RS24965 - SCP2 domain-containing protein, at 5,198,923 to 5,199,447 _RS24965 BWI76_RS24970: BWI76_RS24970 - peptidase U32, at 5,199,669 to 5,200,664 _RS24970 BWI76_RS24975: BWI76_RS24975 - U32 family peptidase, at 5,200,673 to 5,201,551 _RS24975 Position (kb) 5199 5200 5201Strain fitness (log2 ratio) -1 0 1 2at 5198.709 kb on + strand, within BWI76_RS24960at 5198.750 kb on + strand, within BWI76_RS24960at 5198.771 kb on + strand, within BWI76_RS24960at 5198.796 kb on + strand, within BWI76_RS24960at 5199.021 kb on - strand, within BWI76_RS24965at 5199.072 kb on + strand, within BWI76_RS24965at 5199.380 kb on + strand, within BWI76_RS24965at 5199.388 kb on - strand, within BWI76_RS24965at 5199.416 kb on - strandat 5199.564 kb on + strandat 5199.685 kb on - strandat 5199.826 kb on - strand, within BWI76_RS24970at 5199.867 kb on + strand, within BWI76_RS24970at 5199.869 kb on - strand, within BWI76_RS24970at 5200.138 kb on - strand, within BWI76_RS24970at 5200.429 kb on + strand, within BWI76_RS24970at 5200.437 kb on - strand, within BWI76_RS24970at 5200.437 kb on - strand, within BWI76_RS24970at 5200.450 kb on - strand, within BWI76_RS24970at 5200.634 kb on - strandat 5200.649 kb on + strandat 5200.830 kb on - strand, within BWI76_RS24975at 5200.859 kb on - strand, within BWI76_RS24975at 5200.886 kb on + strand, within BWI76_RS24975at 5200.896 kb on + strand, within BWI76_RS24975at 5200.896 kb on + strand, within BWI76_RS24975at 5200.899 kb on - strand, within BWI76_RS24975at 5200.904 kb on - strand, within BWI76_RS24975at 5200.931 kb on - strand, within BWI76_RS24975at 5201.048 kb on - strand, within BWI76_RS24975at 5201.194 kb on + strand, within BWI76_RS24975at 5201.270 kb on - strand, within BWI76_RS24975at 5201.351 kb on + strand, within BWI76_RS24975at 5201.379 kb on - strand, within BWI76_RS24975

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
remove
5,198,709 + BWI76_RS24960 0.56 -0.9
5,198,750 + BWI76_RS24960 0.64 +0.6
5,198,771 + BWI76_RS24960 0.68 +0.4
5,198,796 + BWI76_RS24960 0.73 -0.3
5,199,021 - BWI76_RS24965 0.19 +2.7
5,199,072 + BWI76_RS24965 0.28 -0.7
5,199,380 + BWI76_RS24965 0.87 -0.8
5,199,388 - BWI76_RS24965 0.89 +0.1
5,199,416 - +0.4
5,199,564 + +0.8
5,199,685 - -0.6
5,199,826 - BWI76_RS24970 0.16 -0.0
5,199,867 + BWI76_RS24970 0.20 +0.5
5,199,869 - BWI76_RS24970 0.20 +0.4
5,200,138 - BWI76_RS24970 0.47 +0.4
5,200,429 + BWI76_RS24970 0.76 +0.9
5,200,437 - BWI76_RS24970 0.77 +0.4
5,200,437 - BWI76_RS24970 0.77 +0.9
5,200,450 - BWI76_RS24970 0.78 +0.8
5,200,634 - -0.9
5,200,649 + +1.1
5,200,830 - BWI76_RS24975 0.18 +0.1
5,200,859 - BWI76_RS24975 0.21 +0.5
5,200,886 + BWI76_RS24975 0.24 +0.3
5,200,896 + BWI76_RS24975 0.25 -0.0
5,200,896 + BWI76_RS24975 0.25 -0.1
5,200,899 - BWI76_RS24975 0.26 +0.4
5,200,904 - BWI76_RS24975 0.26 +0.0
5,200,931 - BWI76_RS24975 0.29 +0.0
5,201,048 - BWI76_RS24975 0.43 +0.7
5,201,194 + BWI76_RS24975 0.59 +0.6
5,201,270 - BWI76_RS24975 0.68 -1.0
5,201,351 + BWI76_RS24975 0.77 +2.3
5,201,379 - BWI76_RS24975 0.80 +0.5

Or see this region's nucleotide sequence