Experiment: RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23555 and BWI76_RS23560 are separated by 72 nucleotides BWI76_RS23560 and BWI76_RS23565 are separated by 35 nucleotides BWI76_RS23565 and BWI76_RS23570 are separated by 73 nucleotides
BWI76_RS23555: BWI76_RS23555 - type 1 major fimbrial subunit precursor, at 4,912,996 to 4,913,541
_RS23555
BWI76_RS23560: BWI76_RS23560 - hypothetical protein, at 4,913,614 to 4,914,153
_RS23560
BWI76_RS23565: BWI76_RS23565 - molecular chaperone FimC, at 4,914,189 to 4,914,914
_RS23565
BWI76_RS23570: BWI76_RS23570 - fimbrial protein, at 4,914,988 to 4,917,624
_RS23570
Position (kb)
4913
4914
4915 Strain fitness (log2 ratio)
-2
-1
0
1 at 4912.615 kb on - strand at 4912.615 kb on - strand at 4912.720 kb on + strand at 4913.046 kb on - strand at 4913.119 kb on + strand, within BWI76_RS23555 at 4913.172 kb on - strand, within BWI76_RS23555 at 4913.320 kb on + strand, within BWI76_RS23555 at 4913.331 kb on - strand, within BWI76_RS23555 at 4913.510 kb on - strand at 4913.627 kb on + strand at 4913.966 kb on + strand, within BWI76_RS23560 at 4914.083 kb on + strand, within BWI76_RS23560 at 4914.292 kb on + strand, within BWI76_RS23565 at 4914.421 kb on + strand, within BWI76_RS23565 at 4914.456 kb on - strand, within BWI76_RS23565 at 4914.712 kb on + strand, within BWI76_RS23565 at 4914.712 kb on + strand, within BWI76_RS23565 at 4914.777 kb on - strand, within BWI76_RS23565 at 4914.795 kb on - strand, within BWI76_RS23565 at 4914.815 kb on - strand, within BWI76_RS23565 at 4914.815 kb on - strand, within BWI76_RS23565 at 4914.825 kb on - strand, within BWI76_RS23565 at 4915.025 kb on - strand at 4915.112 kb on - strand at 4915.125 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 4,912,615 - +0.2 4,912,615 - -1.9 4,912,720 + +0.0 4,913,046 - +0.4 4,913,119 + BWI76_RS23555 0.23 +0.4 4,913,172 - BWI76_RS23555 0.32 +0.2 4,913,320 + BWI76_RS23555 0.59 -0.2 4,913,331 - BWI76_RS23555 0.61 +0.8 4,913,510 - +0.6 4,913,627 + +0.0 4,913,966 + BWI76_RS23560 0.65 +0.9 4,914,083 + BWI76_RS23560 0.87 +0.3 4,914,292 + BWI76_RS23565 0.14 -1.8 4,914,421 + BWI76_RS23565 0.32 +0.2 4,914,456 - BWI76_RS23565 0.37 +0.5 4,914,712 + BWI76_RS23565 0.72 +0.5 4,914,712 + BWI76_RS23565 0.72 -0.4 4,914,777 - BWI76_RS23565 0.81 -0.6 4,914,795 - BWI76_RS23565 0.83 +1.4 4,914,815 - BWI76_RS23565 0.86 -0.0 4,914,815 - BWI76_RS23565 0.86 +0.7 4,914,825 - BWI76_RS23565 0.88 -0.1 4,915,025 - -0.2 4,915,112 - +0.2 4,915,125 + -0.7
Or see this region's nucleotide sequence