Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS20220

Experiment: RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS20215 and BWI76_RS20220 are separated by 76 nucleotidesBWI76_RS20220 and BWI76_RS20225 are separated by 11 nucleotidesBWI76_RS20225 and BWI76_RS20230 are separated by 86 nucleotides BWI76_RS20215: BWI76_RS20215 - transcriptional regulator, at 4,236,424 to 4,238,256 _RS20215 BWI76_RS20220: BWI76_RS20220 - sugar phosphatase, at 4,238,333 to 4,238,992 _RS20220 BWI76_RS20225: BWI76_RS20225 - hypothetical protein, at 4,239,004 to 4,239,498 _RS20225 BWI76_RS20230: BWI76_RS20230 - hypothetical protein, at 4,239,585 to 4,240,040 _RS20230 Position (kb) 4238 4239Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4237.357 kb on - strand, within BWI76_RS20215at 4237.658 kb on + strand, within BWI76_RS20215at 4237.666 kb on - strand, within BWI76_RS20215at 4237.921 kb on + strand, within BWI76_RS20215at 4237.930 kb on + strand, within BWI76_RS20215at 4237.967 kb on - strand, within BWI76_RS20215at 4238.082 kb on + strandat 4238.124 kb on + strandat 4238.156 kb on + strandat 4238.231 kb on - strandat 4238.251 kb on + strandat 4238.558 kb on - strand, within BWI76_RS20220at 4238.720 kb on - strand, within BWI76_RS20220at 4238.738 kb on - strand, within BWI76_RS20220at 4238.979 kb on + strandat 4238.979 kb on + strandat 4238.979 kb on + strandat 4238.979 kb on + strandat 4238.987 kb on - strandat 4239.045 kb on - strandat 4239.045 kb on - strandat 4239.226 kb on + strand, within BWI76_RS20225at 4239.369 kb on + strand, within BWI76_RS20225at 4239.469 kb on + strandat 4239.516 kb on + strandat 4239.637 kb on - strand, within BWI76_RS20230at 4239.643 kb on + strand, within BWI76_RS20230

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
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4,237,357 - BWI76_RS20215 0.51 -2.1
4,237,658 + BWI76_RS20215 0.67 -0.2
4,237,666 - BWI76_RS20215 0.68 +3.6
4,237,921 + BWI76_RS20215 0.82 -0.2
4,237,930 + BWI76_RS20215 0.82 -0.5
4,237,967 - BWI76_RS20215 0.84 +0.7
4,238,082 + -0.2
4,238,124 + +0.3
4,238,156 + +0.0
4,238,231 - +0.7
4,238,251 + -0.8
4,238,558 - BWI76_RS20220 0.34 +0.5
4,238,720 - BWI76_RS20220 0.59 +0.7
4,238,738 - BWI76_RS20220 0.61 +0.5
4,238,979 + -0.1
4,238,979 + -0.7
4,238,979 + +1.2
4,238,979 + -0.6
4,238,987 - +0.3
4,239,045 - -0.1
4,239,045 - +0.9
4,239,226 + BWI76_RS20225 0.45 +0.3
4,239,369 + BWI76_RS20225 0.74 +0.3
4,239,469 + +0.4
4,239,516 + +0.2
4,239,637 - BWI76_RS20230 0.11 -0.5
4,239,643 + BWI76_RS20230 0.13 -0.1

Or see this region's nucleotide sequence