Experiment: RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20140 and BWI76_RS20145 overlap by 4 nucleotides BWI76_RS20145 and BWI76_RS20150 overlap by 4 nucleotides BWI76_RS20150 and BWI76_RS20155 are separated by 10 nucleotides BWI76_RS20155 and BWI76_RS20160 are separated by 14 nucleotides
BWI76_RS20140: BWI76_RS20140 - NADH-quinone oxidoreductase subunit L, at 4,220,138 to 4,221,979
_RS20140
BWI76_RS20145: BWI76_RS20145 - NADH-quinone oxidoreductase subunit K, at 4,221,976 to 4,222,278
_RS20145
BWI76_RS20150: BWI76_RS20150 - NADH:ubiquinone oxidoreductase subunit J, at 4,222,275 to 4,222,829
_RS20150
BWI76_RS20155: BWI76_RS20155 - NADH-quinone oxidoreductase subunit I, at 4,222,840 to 4,223,382
_RS20155
BWI76_RS20160: BWI76_RS20160 - NADH-quinone oxidoreductase subunit H, at 4,223,397 to 4,224,374
_RS20160
Position (kb)
4222
4223 Strain fitness (log2 ratio)
-2
-1
0
1 at 4221.317 kb on + strand, within BWI76_RS20140 at 4221.504 kb on + strand, within BWI76_RS20140 at 4221.544 kb on + strand, within BWI76_RS20140 at 4222.044 kb on + strand, within BWI76_RS20145 at 4222.323 kb on + strand at 4222.604 kb on + strand, within BWI76_RS20150 at 4222.645 kb on - strand, within BWI76_RS20150 at 4222.756 kb on + strand, within BWI76_RS20150 at 4222.891 kb on + strand at 4222.899 kb on - strand, within BWI76_RS20155 at 4223.157 kb on + strand, within BWI76_RS20155 at 4223.190 kb on + strand, within BWI76_RS20155 at 4223.388 kb on + strand at 4223.447 kb on + strand at 4223.659 kb on + strand, within BWI76_RS20160 at 4223.804 kb on - strand, within BWI76_RS20160
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 4,221,317 + BWI76_RS20140 0.64 -0.5 4,221,504 + BWI76_RS20140 0.74 -1.1 4,221,544 + BWI76_RS20140 0.76 -0.5 4,222,044 + BWI76_RS20145 0.22 -0.5 4,222,323 + +0.5 4,222,604 + BWI76_RS20150 0.59 -1.4 4,222,645 - BWI76_RS20150 0.67 -0.7 4,222,756 + BWI76_RS20150 0.87 -1.3 4,222,891 + -1.1 4,222,899 - BWI76_RS20155 0.11 +0.4 4,223,157 + BWI76_RS20155 0.58 -1.2 4,223,190 + BWI76_RS20155 0.64 +0.9 4,223,388 + -2.5 4,223,447 + +0.1 4,223,659 + BWI76_RS20160 0.27 -0.5 4,223,804 - BWI76_RS20160 0.42 -2.0
Or see this region's nucleotide sequence