Experiment: RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19620 and BWI76_RS19625 overlap by 4 nucleotides BWI76_RS19625 and BWI76_RS19630 are separated by 72 nucleotides BWI76_RS19630 and BWI76_RS19635 are separated by 217 nucleotides
BWI76_RS19620: BWI76_RS19620 - hypothetical protein, at 4,100,970 to 4,101,629
_RS19620
BWI76_RS19625: BWI76_RS19625 - DUF4810 domain-containing protein, at 4,101,626 to 4,101,982
_RS19625
BWI76_RS19630: BWI76_RS19630 - putative lipoprotein, at 4,102,055 to 4,102,726
_RS19630
BWI76_RS19635: BWI76_RS19635 - galactoside ABC transporter permease MglC, at 4,102,944 to 4,103,954
_RS19635
Position (kb) 4102
4103 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4101.287 kb on + strand, within BWI76_RS19620 at 4101.288 kb on - strand, within BWI76_RS19620 at 4101.295 kb on - strand, within BWI76_RS19620 at 4101.348 kb on + strand, within BWI76_RS19620 at 4101.387 kb on + strand, within BWI76_RS19620 at 4101.445 kb on - strand, within BWI76_RS19620 at 4101.450 kb on - strand, within BWI76_RS19620 at 4101.517 kb on - strand, within BWI76_RS19620 at 4101.531 kb on - strand, within BWI76_RS19620 at 4101.531 kb on - strand, within BWI76_RS19620 at 4101.531 kb on - strand, within BWI76_RS19620 at 4101.543 kb on + strand, within BWI76_RS19620 at 4101.574 kb on - strand at 4101.576 kb on + strand at 4101.581 kb on + strand at 4101.581 kb on + strand at 4101.581 kb on + strand at 4101.582 kb on - strand at 4101.584 kb on - strand at 4101.589 kb on - strand at 4101.589 kb on - strand at 4101.589 kb on - strand at 4101.589 kb on - strand at 4101.589 kb on - strand at 4101.589 kb on - strand at 4101.602 kb on - strand at 4101.701 kb on - strand, within BWI76_RS19625 at 4101.722 kb on - strand, within BWI76_RS19625 at 4101.722 kb on - strand, within BWI76_RS19625 at 4101.725 kb on + strand, within BWI76_RS19625 at 4101.772 kb on + strand, within BWI76_RS19625 at 4101.780 kb on - strand, within BWI76_RS19625 at 4101.780 kb on - strand, within BWI76_RS19625 at 4101.780 kb on - strand, within BWI76_RS19625 at 4101.780 kb on - strand, within BWI76_RS19625 at 4101.781 kb on + strand, within BWI76_RS19625 at 4101.788 kb on - strand, within BWI76_RS19625 at 4101.800 kb on - strand, within BWI76_RS19625 at 4101.849 kb on + strand, within BWI76_RS19625 at 4101.849 kb on + strand at 4101.849 kb on + strand, within BWI76_RS19625 at 4101.849 kb on + strand, within BWI76_RS19625 at 4101.851 kb on + strand, within BWI76_RS19625 at 4101.857 kb on - strand, within BWI76_RS19625 at 4101.857 kb on - strand, within BWI76_RS19625 at 4101.857 kb on - strand, within BWI76_RS19625 at 4101.857 kb on - strand, within BWI76_RS19625 at 4101.857 kb on - strand, within BWI76_RS19625 at 4101.861 kb on + strand, within BWI76_RS19625 at 4101.861 kb on + strand, within BWI76_RS19625 at 4101.861 kb on + strand, within BWI76_RS19625 at 4101.876 kb on + strand, within BWI76_RS19625 at 4101.900 kb on + strand, within BWI76_RS19625 at 4101.907 kb on - strand, within BWI76_RS19625 at 4101.908 kb on + strand, within BWI76_RS19625 at 4101.908 kb on - strand, within BWI76_RS19625 at 4101.909 kb on + strand, within BWI76_RS19625 at 4101.910 kb on + strand, within BWI76_RS19625 at 4101.910 kb on + strand, within BWI76_RS19625 at 4101.910 kb on + strand, within BWI76_RS19625 at 4101.910 kb on + strand, within BWI76_RS19625 at 4101.910 kb on + strand, within BWI76_RS19625 at 4101.910 kb on + strand, within BWI76_RS19625 at 4101.910 kb on + strand, within BWI76_RS19625 at 4101.910 kb on + strand, within BWI76_RS19625 at 4101.910 kb on + strand, within BWI76_RS19625 at 4101.910 kb on + strand, within BWI76_RS19625 at 4101.910 kb on + strand, within BWI76_RS19625 at 4101.910 kb on + strand, within BWI76_RS19625 at 4101.910 kb on + strand, within BWI76_RS19625 at 4101.910 kb on + strand, within BWI76_RS19625 at 4101.910 kb on + strand, within BWI76_RS19625 at 4101.910 kb on + strand, within BWI76_RS19625 at 4101.910 kb on + strand, within BWI76_RS19625 at 4101.910 kb on + strand, within BWI76_RS19625 at 4101.910 kb on + strand, within BWI76_RS19625 at 4101.910 kb on + strand, within BWI76_RS19625 at 4101.910 kb on + strand, within BWI76_RS19625 at 4101.910 kb on + strand, within BWI76_RS19625 at 4101.916 kb on - strand, within BWI76_RS19625 at 4101.917 kb on - strand, within BWI76_RS19625 at 4101.917 kb on - strand, within BWI76_RS19625 at 4101.917 kb on - strand, within BWI76_RS19625 at 4101.917 kb on - strand at 4101.917 kb on - strand, within BWI76_RS19625 at 4101.917 kb on - strand, within BWI76_RS19625 at 4101.917 kb on - strand, within BWI76_RS19625 at 4101.917 kb on - strand, within BWI76_RS19625 at 4101.917 kb on - strand, within BWI76_RS19625 at 4101.917 kb on - strand, within BWI76_RS19625 at 4101.918 kb on - strand, within BWI76_RS19625 at 4101.918 kb on - strand, within BWI76_RS19625 at 4101.918 kb on - strand, within BWI76_RS19625 at 4101.918 kb on - strand, within BWI76_RS19625 at 4101.918 kb on - strand, within BWI76_RS19625 at 4101.918 kb on - strand, within BWI76_RS19625 at 4101.918 kb on - strand at 4101.918 kb on - strand, within BWI76_RS19625 at 4101.918 kb on - strand, within BWI76_RS19625 at 4101.918 kb on - strand, within BWI76_RS19625 at 4101.918 kb on - strand, within BWI76_RS19625 at 4101.918 kb on - strand, within BWI76_RS19625 at 4101.918 kb on - strand, within BWI76_RS19625 at 4101.918 kb on - strand, within BWI76_RS19625 at 4101.918 kb on - strand, within BWI76_RS19625 at 4101.918 kb on - strand, within BWI76_RS19625 at 4101.918 kb on - strand, within BWI76_RS19625 at 4101.918 kb on - strand, within BWI76_RS19625 at 4101.918 kb on - strand, within BWI76_RS19625 at 4101.918 kb on - strand, within BWI76_RS19625 at 4102.012 kb on + strand at 4102.111 kb on - strand at 4102.111 kb on - strand at 4102.127 kb on + strand, within BWI76_RS19630 at 4102.127 kb on + strand, within BWI76_RS19630 at 4102.127 kb on + strand, within BWI76_RS19630 at 4102.135 kb on - strand, within BWI76_RS19630 at 4102.135 kb on - strand, within BWI76_RS19630 at 4102.135 kb on - strand, within BWI76_RS19630 at 4102.135 kb on - strand, within BWI76_RS19630 at 4102.143 kb on - strand, within BWI76_RS19630 at 4102.154 kb on + strand, within BWI76_RS19630 at 4102.160 kb on - strand, within BWI76_RS19630 at 4102.161 kb on - strand, within BWI76_RS19630 at 4102.226 kb on - strand, within BWI76_RS19630 at 4102.295 kb on - strand, within BWI76_RS19630 at 4102.302 kb on + strand, within BWI76_RS19630 at 4102.305 kb on - strand, within BWI76_RS19630 at 4102.310 kb on - strand at 4102.368 kb on - strand at 4102.391 kb on - strand at 4102.396 kb on - strand, within BWI76_RS19630 at 4102.408 kb on + strand, within BWI76_RS19630 at 4102.408 kb on + strand, within BWI76_RS19630 at 4102.408 kb on + strand, within BWI76_RS19630 at 4102.408 kb on + strand, within BWI76_RS19630 at 4102.408 kb on + strand, within BWI76_RS19630 at 4102.408 kb on + strand, within BWI76_RS19630 at 4102.408 kb on + strand, within BWI76_RS19630 at 4102.416 kb on - strand, within BWI76_RS19630 at 4102.416 kb on - strand, within BWI76_RS19630 at 4102.416 kb on - strand, within BWI76_RS19630 at 4102.416 kb on - strand, within BWI76_RS19630 at 4102.427 kb on - strand, within BWI76_RS19630 at 4102.440 kb on + strand, within BWI76_RS19630 at 4102.448 kb on - strand, within BWI76_RS19630 at 4102.448 kb on - strand, within BWI76_RS19630 at 4102.448 kb on - strand, within BWI76_RS19630 at 4102.448 kb on - strand, within BWI76_RS19630 at 4102.468 kb on + strand, within BWI76_RS19630 at 4102.572 kb on + strand, within BWI76_RS19630 at 4102.614 kb on - strand, within BWI76_RS19630 at 4102.619 kb on - strand, within BWI76_RS19630 at 4102.620 kb on - strand, within BWI76_RS19630 at 4102.623 kb on + strand, within BWI76_RS19630 at 4102.623 kb on + strand, within BWI76_RS19630 at 4102.623 kb on + strand, within BWI76_RS19630 at 4102.623 kb on + strand, within BWI76_RS19630 at 4102.630 kb on - strand, within BWI76_RS19630 at 4102.631 kb on - strand, within BWI76_RS19630 at 4102.631 kb on - strand, within BWI76_RS19630 at 4102.631 kb on - strand, within BWI76_RS19630 at 4102.933 kb on - strand at 4102.970 kb on + strand at 4102.979 kb on - strand at 4102.979 kb on - strand at 4103.018 kb on + strand at 4103.018 kb on + strand at 4103.022 kb on + strand at 4103.027 kb on + strand at 4103.027 kb on + strand at 4103.027 kb on + strand at 4103.028 kb on - strand at 4103.030 kb on - strand at 4103.037 kb on + strand at 4103.046 kb on - strand, within BWI76_RS19635 at 4103.046 kb on - strand, within BWI76_RS19635 at 4103.051 kb on - strand, within BWI76_RS19635 at 4103.104 kb on - strand, within BWI76_RS19635 at 4103.108 kb on + strand, within BWI76_RS19635 at 4103.109 kb on - strand, within BWI76_RS19635 at 4103.199 kb on - strand, within BWI76_RS19635 at 4103.265 kb on + strand, within BWI76_RS19635 at 4103.265 kb on + strand, within BWI76_RS19635 at 4103.272 kb on - strand, within BWI76_RS19635 at 4103.408 kb on + strand, within BWI76_RS19635 at 4103.426 kb on + strand, within BWI76_RS19635 at 4103.433 kb on + strand, within BWI76_RS19635 at 4103.441 kb on - strand, within BWI76_RS19635 at 4103.560 kb on + strand, within BWI76_RS19635 at 4103.562 kb on + strand, within BWI76_RS19635 at 4103.595 kb on + strand, within BWI76_RS19635 at 4103.627 kb on - strand, within BWI76_RS19635 at 4103.679 kb on - strand, within BWI76_RS19635 at 4103.682 kb on + strand, within BWI76_RS19635 at 4103.725 kb on - strand, within BWI76_RS19635
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 4,101,287 + BWI76_RS19620 0.48 -1.1 4,101,288 - BWI76_RS19620 0.48 -0.8 4,101,295 - BWI76_RS19620 0.49 +0.9 4,101,348 + BWI76_RS19620 0.57 -0.5 4,101,387 + BWI76_RS19620 0.63 +0.4 4,101,445 - BWI76_RS19620 0.72 -0.7 4,101,450 - BWI76_RS19620 0.73 +0.3 4,101,517 - BWI76_RS19620 0.83 +0.3 4,101,531 - BWI76_RS19620 0.85 -1.0 4,101,531 - BWI76_RS19620 0.85 +1.0 4,101,531 - BWI76_RS19620 0.85 -1.3 4,101,543 + BWI76_RS19620 0.87 +0.3 4,101,574 - -0.6 4,101,576 + +2.5 4,101,581 + +1.3 4,101,581 + +0.2 4,101,581 + +0.9 4,101,582 - -1.1 4,101,584 - +0.2 4,101,589 - +0.2 4,101,589 - -0.7 4,101,589 - -0.0 4,101,589 - +0.6 4,101,589 - -0.6 4,101,589 - +1.2 4,101,602 - -0.9 4,101,701 - BWI76_RS19625 0.21 -0.4 4,101,722 - BWI76_RS19625 0.27 -0.4 4,101,722 - BWI76_RS19625 0.27 -0.1 4,101,725 + BWI76_RS19625 0.28 -0.9 4,101,772 + BWI76_RS19625 0.41 +0.9 4,101,780 - BWI76_RS19625 0.43 -0.4 4,101,780 - BWI76_RS19625 0.43 -1.4 4,101,780 - BWI76_RS19625 0.43 +0.2 4,101,780 - BWI76_RS19625 0.43 +1.5 4,101,781 + BWI76_RS19625 0.43 -0.4 4,101,788 - BWI76_RS19625 0.45 -1.9 4,101,800 - BWI76_RS19625 0.49 +0.1 4,101,849 + BWI76_RS19625 0.62 -1.7 4,101,849 + +0.9 4,101,849 + BWI76_RS19625 0.62 -0.7 4,101,849 + BWI76_RS19625 0.62 +0.9 4,101,851 + BWI76_RS19625 0.63 -0.7 4,101,857 - BWI76_RS19625 0.65 +0.5 4,101,857 - BWI76_RS19625 0.65 +1.8 4,101,857 - BWI76_RS19625 0.65 +0.0 4,101,857 - BWI76_RS19625 0.65 -0.1 4,101,857 - BWI76_RS19625 0.65 +0.3 4,101,861 + BWI76_RS19625 0.66 +0.4 4,101,861 + BWI76_RS19625 0.66 +0.5 4,101,861 + BWI76_RS19625 0.66 +0.3 4,101,876 + BWI76_RS19625 0.70 -2.8 4,101,900 + BWI76_RS19625 0.77 +0.0 4,101,907 - BWI76_RS19625 0.79 +0.8 4,101,908 + BWI76_RS19625 0.79 -1.1 4,101,908 - BWI76_RS19625 0.79 -2.8 4,101,909 + BWI76_RS19625 0.79 -3.2 4,101,910 + BWI76_RS19625 0.80 -1.0 4,101,910 + BWI76_RS19625 0.80 +0.9 4,101,910 + BWI76_RS19625 0.80 -0.1 4,101,910 + BWI76_RS19625 0.80 -2.3 4,101,910 + BWI76_RS19625 0.80 -2.1 4,101,910 + BWI76_RS19625 0.80 -0.7 4,101,910 + BWI76_RS19625 0.80 -1.9 4,101,910 + BWI76_RS19625 0.80 -0.8 4,101,910 + BWI76_RS19625 0.80 +0.1 4,101,910 + BWI76_RS19625 0.80 -0.1 4,101,910 + BWI76_RS19625 0.80 +0.2 4,101,910 + BWI76_RS19625 0.80 -2.1 4,101,910 + BWI76_RS19625 0.80 -0.1 4,101,910 + BWI76_RS19625 0.80 +0.4 4,101,910 + BWI76_RS19625 0.80 -1.7 4,101,910 + BWI76_RS19625 0.80 +0.2 4,101,910 + BWI76_RS19625 0.80 -0.6 4,101,910 + BWI76_RS19625 0.80 +0.1 4,101,910 + BWI76_RS19625 0.80 -0.7 4,101,910 + BWI76_RS19625 0.80 +0.9 4,101,910 + BWI76_RS19625 0.80 -0.6 4,101,910 + BWI76_RS19625 0.80 +0.9 4,101,916 - BWI76_RS19625 0.81 +0.6 4,101,917 - BWI76_RS19625 0.82 -1.8 4,101,917 - BWI76_RS19625 0.82 -1.0 4,101,917 - BWI76_RS19625 0.82 -0.3 4,101,917 - +0.9 4,101,917 - BWI76_RS19625 0.82 +0.1 4,101,917 - BWI76_RS19625 0.82 -2.4 4,101,917 - BWI76_RS19625 0.82 +0.9 4,101,917 - BWI76_RS19625 0.82 +0.2 4,101,917 - BWI76_RS19625 0.82 -2.1 4,101,917 - BWI76_RS19625 0.82 -1.5 4,101,918 - BWI76_RS19625 0.82 -0.4 4,101,918 - BWI76_RS19625 0.82 -0.1 4,101,918 - BWI76_RS19625 0.82 -0.7 4,101,918 - BWI76_RS19625 0.82 -0.7 4,101,918 - BWI76_RS19625 0.82 +0.9 4,101,918 - BWI76_RS19625 0.82 +0.0 4,101,918 - -0.1 4,101,918 - BWI76_RS19625 0.82 +0.0 4,101,918 - BWI76_RS19625 0.82 -1.1 4,101,918 - BWI76_RS19625 0.82 -0.9 4,101,918 - BWI76_RS19625 0.82 -0.1 4,101,918 - BWI76_RS19625 0.82 +1.2 4,101,918 - BWI76_RS19625 0.82 -3.2 4,101,918 - BWI76_RS19625 0.82 +0.9 4,101,918 - BWI76_RS19625 0.82 -1.9 4,101,918 - BWI76_RS19625 0.82 +0.3 4,101,918 - BWI76_RS19625 0.82 -0.5 4,101,918 - BWI76_RS19625 0.82 -0.7 4,101,918 - BWI76_RS19625 0.82 -1.1 4,101,918 - BWI76_RS19625 0.82 +2.5 4,102,012 + -1.1 4,102,111 - -0.4 4,102,111 - -0.4 4,102,127 + BWI76_RS19630 0.11 +0.5 4,102,127 + BWI76_RS19630 0.11 -0.7 4,102,127 + BWI76_RS19630 0.11 +1.9 4,102,135 - BWI76_RS19630 0.12 +0.4 4,102,135 - BWI76_RS19630 0.12 -1.0 4,102,135 - BWI76_RS19630 0.12 -1.4 4,102,135 - BWI76_RS19630 0.12 -0.8 4,102,143 - BWI76_RS19630 0.13 -0.4 4,102,154 + BWI76_RS19630 0.15 -1.3 4,102,160 - BWI76_RS19630 0.16 -0.1 4,102,161 - BWI76_RS19630 0.16 -0.4 4,102,226 - BWI76_RS19630 0.25 -0.5 4,102,295 - BWI76_RS19630 0.36 -2.8 4,102,302 + BWI76_RS19630 0.37 -1.3 4,102,305 - BWI76_RS19630 0.37 -1.2 4,102,310 - +0.9 4,102,368 - -0.1 4,102,391 - +0.9 4,102,396 - BWI76_RS19630 0.51 +0.9 4,102,408 + BWI76_RS19630 0.53 -0.9 4,102,408 + BWI76_RS19630 0.53 -0.3 4,102,408 + BWI76_RS19630 0.53 -0.3 4,102,408 + BWI76_RS19630 0.53 -0.4 4,102,408 + BWI76_RS19630 0.53 -1.4 4,102,408 + BWI76_RS19630 0.53 +1.3 4,102,408 + BWI76_RS19630 0.53 +0.8 4,102,416 - BWI76_RS19630 0.54 -0.2 4,102,416 - BWI76_RS19630 0.54 -0.7 4,102,416 - BWI76_RS19630 0.54 -1.8 4,102,416 - BWI76_RS19630 0.54 -1.4 4,102,427 - BWI76_RS19630 0.55 +0.9 4,102,440 + BWI76_RS19630 0.57 -0.8 4,102,448 - BWI76_RS19630 0.58 +0.9 4,102,448 - BWI76_RS19630 0.58 -0.2 4,102,448 - BWI76_RS19630 0.58 -0.4 4,102,448 - BWI76_RS19630 0.58 -0.3 4,102,468 + BWI76_RS19630 0.61 -1.7 4,102,572 + BWI76_RS19630 0.77 -1.0 4,102,614 - BWI76_RS19630 0.83 +1.5 4,102,619 - BWI76_RS19630 0.84 -0.7 4,102,620 - BWI76_RS19630 0.84 -0.8 4,102,623 + BWI76_RS19630 0.85 -1.1 4,102,623 + BWI76_RS19630 0.85 -1.0 4,102,623 + BWI76_RS19630 0.85 +1.4 4,102,623 + BWI76_RS19630 0.85 -0.9 4,102,630 - BWI76_RS19630 0.86 +1.9 4,102,631 - BWI76_RS19630 0.86 -0.4 4,102,631 - BWI76_RS19630 0.86 +0.1 4,102,631 - BWI76_RS19630 0.86 -0.8 4,102,933 - +0.7 4,102,970 + -0.4 4,102,979 - -0.1 4,102,979 - -0.2 4,103,018 + -1.4 4,103,018 + +0.5 4,103,022 + +0.9 4,103,027 + +0.6 4,103,027 + -0.5 4,103,027 + -2.1 4,103,028 - -2.0 4,103,030 - -0.6 4,103,037 + +1.1 4,103,046 - BWI76_RS19635 0.10 +0.9 4,103,046 - BWI76_RS19635 0.10 -0.1 4,103,051 - BWI76_RS19635 0.11 +1.1 4,103,104 - BWI76_RS19635 0.16 +0.0 4,103,108 + BWI76_RS19635 0.16 -0.4 4,103,109 - BWI76_RS19635 0.16 -0.0 4,103,199 - BWI76_RS19635 0.25 -0.1 4,103,265 + BWI76_RS19635 0.32 -2.3 4,103,265 + BWI76_RS19635 0.32 +0.9 4,103,272 - BWI76_RS19635 0.32 -0.3 4,103,408 + BWI76_RS19635 0.46 +0.5 4,103,426 + BWI76_RS19635 0.48 -1.2 4,103,433 + BWI76_RS19635 0.48 -1.8 4,103,441 - BWI76_RS19635 0.49 -1.1 4,103,560 + BWI76_RS19635 0.61 -0.8 4,103,562 + BWI76_RS19635 0.61 +0.5 4,103,595 + BWI76_RS19635 0.64 +0.5 4,103,627 - BWI76_RS19635 0.68 -2.6 4,103,679 - BWI76_RS19635 0.73 -0.1 4,103,682 + BWI76_RS19635 0.73 -0.1 4,103,725 - BWI76_RS19635 0.77 +0.9
Or see this region's nucleotide sequence