Experiment: RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16915 and BWI76_RS16920 are separated by 17 nucleotides BWI76_RS16920 and BWI76_RS16925 are separated by 1 nucleotides BWI76_RS16925 and BWI76_RS16930 are separated by 190 nucleotides
BWI76_RS16915: BWI76_RS16915 - alpha/beta hydrolase fold protein, at 3,507,370 to 3,508,236
_RS16915
BWI76_RS16920: BWI76_RS16920 - 3-(2,3-dihydroxyphenyl)propionate dioxygenase, at 3,508,254 to 3,509,198
_RS16920
BWI76_RS16925: BWI76_RS16925 - 3-(3-hydroxyphenyl)propionate hydroxylase, at 3,509,200 to 3,510,867
_RS16925
BWI76_RS16930: BWI76_RS16930 - transcriptional regulator, at 3,511,058 to 3,511,864
_RS16930
Position (kb)
3509
3510
3511 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3508.418 kb on + strand, within BWI76_RS16920 at 3508.568 kb on + strand, within BWI76_RS16920 at 3509.124 kb on + strand at 3509.955 kb on - strand, within BWI76_RS16925 at 3510.070 kb on - strand, within BWI76_RS16925 at 3510.179 kb on - strand, within BWI76_RS16925 at 3510.192 kb on + strand, within BWI76_RS16925 at 3510.497 kb on - strand, within BWI76_RS16925 at 3510.514 kb on - strand, within BWI76_RS16925 at 3510.662 kb on - strand, within BWI76_RS16925 at 3510.824 kb on - strand at 3510.881 kb on + strand at 3510.966 kb on + strand at 3510.966 kb on + strand at 3511.275 kb on + strand, within BWI76_RS16930 at 3511.732 kb on - strand, within BWI76_RS16930 at 3511.754 kb on + strand, within BWI76_RS16930
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 3,508,418 + BWI76_RS16920 0.17 +2.2 3,508,568 + BWI76_RS16920 0.33 -1.0 3,509,124 + +2.9 3,509,955 - BWI76_RS16925 0.45 +0.9 3,510,070 - BWI76_RS16925 0.52 -0.3 3,510,179 - BWI76_RS16925 0.59 +0.7 3,510,192 + BWI76_RS16925 0.59 +0.7 3,510,497 - BWI76_RS16925 0.78 +0.9 3,510,514 - BWI76_RS16925 0.79 +0.7 3,510,662 - BWI76_RS16925 0.88 +0.6 3,510,824 - +0.7 3,510,881 + -1.6 3,510,966 + +0.0 3,510,966 + +0.4 3,511,275 + BWI76_RS16930 0.27 +0.1 3,511,732 - BWI76_RS16930 0.84 -0.1 3,511,754 + BWI76_RS16930 0.86 +0.6
Or see this region's nucleotide sequence