Experiment: RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16660 and BWI76_RS16665 are separated by 1 nucleotides BWI76_RS16665 and BWI76_RS16670 are separated by 22 nucleotides BWI76_RS16670 and BWI76_RS16675 are separated by 62 nucleotides
BWI76_RS16660: BWI76_RS16660 - SfnB family sulfur acquisition oxidoreductase, at 3,447,939 to 3,449,162
_RS16660
BWI76_RS16665: BWI76_RS16665 - ABC transporter permease, at 3,449,164 to 3,449,838
_RS16665
BWI76_RS16670: BWI76_RS16670 - NLPA lipoprotein, at 3,449,861 to 3,450,637
_RS16670
BWI76_RS16675: BWI76_RS16675 - ABC transporter, at 3,450,700 to 3,451,746
_RS16675
Position (kb)
3449
3450
3451 Strain fitness (log2 ratio)
-1
0
1
2 at 3448.958 kb on + strand, within BWI76_RS16660 at 3449.066 kb on + strand at 3449.513 kb on - strand, within BWI76_RS16665 at 3449.537 kb on + strand, within BWI76_RS16665 at 3449.538 kb on - strand, within BWI76_RS16665 at 3449.712 kb on - strand, within BWI76_RS16665 at 3449.880 kb on + strand at 3450.033 kb on + strand, within BWI76_RS16670 at 3450.041 kb on - strand, within BWI76_RS16670 at 3450.124 kb on - strand, within BWI76_RS16670 at 3450.255 kb on - strand, within BWI76_RS16670 at 3450.465 kb on + strand, within BWI76_RS16670 at 3450.581 kb on - strand at 3450.591 kb on + strand at 3450.761 kb on - strand at 3450.767 kb on - strand at 3451.022 kb on + strand, within BWI76_RS16675 at 3451.310 kb on + strand, within BWI76_RS16675
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 3,448,958 + BWI76_RS16660 0.83 +0.0 3,449,066 + +0.3 3,449,513 - BWI76_RS16665 0.52 +0.1 3,449,537 + BWI76_RS16665 0.55 +1.0 3,449,538 - BWI76_RS16665 0.55 +0.5 3,449,712 - BWI76_RS16665 0.81 -0.4 3,449,880 + -0.7 3,450,033 + BWI76_RS16670 0.22 -0.5 3,450,041 - BWI76_RS16670 0.23 +0.4 3,450,124 - BWI76_RS16670 0.34 +0.2 3,450,255 - BWI76_RS16670 0.51 +0.7 3,450,465 + BWI76_RS16670 0.78 +1.8 3,450,581 - +1.0 3,450,591 + +0.2 3,450,761 - +0.9 3,450,767 - +0.4 3,451,022 + BWI76_RS16675 0.31 +0.7 3,451,310 + BWI76_RS16675 0.58 -0.6
Or see this region's nucleotide sequence