Experiment: RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16635 and BWI76_RS16640 are separated by 225 nucleotides BWI76_RS16640 and BWI76_RS16645 are separated by 9 nucleotides BWI76_RS16645 and BWI76_RS16650 are separated by 93 nucleotides BWI76_RS16650 and BWI76_RS16655 are separated by 30 nucleotides
BWI76_RS16635: BWI76_RS16635 - carbonate dehydratase, at 3,444,213 to 3,444,848
_RS16635
BWI76_RS16640: BWI76_RS16640 - threonine transporter, at 3,445,074 to 3,445,703
_RS16640
BWI76_RS16645: BWI76_RS16645 - DeoR family transcriptional regulator, at 3,445,713 to 3,446,483
_RS16645
BWI76_RS16650: BWI76_RS16650 - glyoxalase I, nickel isomerase, at 3,446,577 to 3,446,960
_RS16650
BWI76_RS16655: BWI76_RS16655 - CatA-like O-acetyltransferase, at 3,446,991 to 3,447,630
_RS16655
Position (kb)
3445
3446
3447 Strain fitness (log2 ratio)
-1
0
1 at 3444.738 kb on - strand, within BWI76_RS16635 at 3444.963 kb on + strand at 3445.112 kb on - strand at 3445.124 kb on + strand at 3445.320 kb on - strand, within BWI76_RS16640 at 3445.342 kb on - strand, within BWI76_RS16640 at 3446.115 kb on - strand, within BWI76_RS16645 at 3446.228 kb on - strand, within BWI76_RS16645 at 3446.228 kb on - strand, within BWI76_RS16645 at 3446.757 kb on - strand, within BWI76_RS16650 at 3446.960 kb on + strand at 3446.981 kb on + strand at 3447.073 kb on + strand, within BWI76_RS16655 at 3447.131 kb on - strand, within BWI76_RS16655 at 3447.451 kb on - strand, within BWI76_RS16655 at 3447.463 kb on - strand, within BWI76_RS16655
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 3,444,738 - BWI76_RS16635 0.83 -0.5 3,444,963 + -1.5 3,445,112 - +0.2 3,445,124 + +0.2 3,445,320 - BWI76_RS16640 0.39 +0.1 3,445,342 - BWI76_RS16640 0.43 -0.4 3,446,115 - BWI76_RS16645 0.52 +1.0 3,446,228 - BWI76_RS16645 0.67 +1.0 3,446,228 - BWI76_RS16645 0.67 -0.1 3,446,757 - BWI76_RS16650 0.47 -0.8 3,446,960 + -1.0 3,446,981 + +0.6 3,447,073 + BWI76_RS16655 0.13 +0.6 3,447,131 - BWI76_RS16655 0.22 +1.4 3,447,451 - BWI76_RS16655 0.72 +0.5 3,447,463 - BWI76_RS16655 0.74 +0.4
Or see this region's nucleotide sequence