Experiment: RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16085 and BWI76_RS16090 overlap by 4 nucleotides BWI76_RS16090 and BWI76_RS16095 overlap by 20 nucleotides BWI76_RS16095 and BWI76_RS16100 are separated by 67 nucleotides
BWI76_RS16085: BWI76_RS16085 - two-component system sensor histidine kinase DcuS, at 3,335,222 to 3,336,841
_RS16085
BWI76_RS16090: BWI76_RS16090 - two-component system response regulator DcuR, at 3,336,838 to 3,337,557
_RS16090
BWI76_RS16095: BWI76_RS16095 - thiamine biosynthesis protein ApbE, at 3,337,538 to 3,338,488
_RS16095
BWI76_RS16100: BWI76_RS16100 - flavocytochrome c, at 3,338,556 to 3,341,333
_RS16100
Position (kb)
3337
3338
3339 Strain fitness (log2 ratio)
-2
-1
0
1 at 3336.568 kb on + strand, within BWI76_RS16085 at 3336.650 kb on + strand, within BWI76_RS16085 at 3336.822 kb on + strand at 3337.028 kb on - strand, within BWI76_RS16090 at 3337.119 kb on - strand, within BWI76_RS16090 at 3337.143 kb on - strand, within BWI76_RS16090 at 3337.825 kb on + strand, within BWI76_RS16095 at 3338.170 kb on + strand, within BWI76_RS16095 at 3338.331 kb on + strand, within BWI76_RS16095 at 3338.426 kb on - strand at 3338.468 kb on - strand at 3338.505 kb on - strand at 3338.606 kb on - strand at 3339.005 kb on + strand, within BWI76_RS16100 at 3339.415 kb on - strand, within BWI76_RS16100 at 3339.439 kb on + strand, within BWI76_RS16100 at 3339.465 kb on - strand, within BWI76_RS16100
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 3,336,568 + BWI76_RS16085 0.83 -0.6 3,336,650 + BWI76_RS16085 0.88 -2.1 3,336,822 + +0.4 3,337,028 - BWI76_RS16090 0.26 -1.3 3,337,119 - BWI76_RS16090 0.39 -0.3 3,337,143 - BWI76_RS16090 0.42 +0.2 3,337,825 + BWI76_RS16095 0.30 +1.7 3,338,170 + BWI76_RS16095 0.66 +0.9 3,338,331 + BWI76_RS16095 0.83 +0.3 3,338,426 - +0.9 3,338,468 - +0.0 3,338,505 - -0.0 3,338,606 - -0.4 3,339,005 + BWI76_RS16100 0.16 +0.9 3,339,415 - BWI76_RS16100 0.31 +0.7 3,339,439 + BWI76_RS16100 0.32 +0.4 3,339,465 - BWI76_RS16100 0.33 +0.2
Or see this region's nucleotide sequence