Experiment: RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS10930 and BWI76_RS10935 overlap by 8 nucleotides BWI76_RS10935 and BWI76_RS10940 are separated by 66 nucleotides BWI76_RS10940 and BWI76_RS10945 are separated by 0 nucleotides BWI76_RS10945 and BWI76_RS10950 are separated by 79 nucleotides
BWI76_RS10930: BWI76_RS10930 - glucan biosynthesis protein G, at 2,307,601 to 2,309,154
_RS10930
BWI76_RS10935: BWI76_RS10935 - glucan biosynthesis glucosyltransferase H, at 2,309,147 to 2,311,675
_RS10935
BWI76_RS10940: BWI76_RS10940 - YceK/YidQ family lipoprotein, at 2,311,742 to 2,311,969
_RS10940
BWI76_RS10945: BWI76_RS10945 - SecY/SecA suppressor protein, at 2,311,970 to 2,312,356
_RS10945
BWI76_RS10950: BWI76_RS10950 - MFS transporter, at 2,312,436 to 2,313,686
_RS10950
Position (kb)
2309
2310
2311
2312 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2308.325 kb on - strand, within BWI76_RS10930 at 2308.504 kb on - strand, within BWI76_RS10930 at 2308.544 kb on + strand, within BWI76_RS10930 at 2308.633 kb on - strand, within BWI76_RS10930 at 2308.882 kb on + strand, within BWI76_RS10930 at 2309.377 kb on + strand at 2309.383 kb on - strand at 2309.655 kb on - strand, within BWI76_RS10935 at 2309.778 kb on - strand, within BWI76_RS10935 at 2309.847 kb on + strand, within BWI76_RS10935 at 2310.070 kb on - strand, within BWI76_RS10935 at 2310.385 kb on + strand, within BWI76_RS10935 at 2310.395 kb on - strand, within BWI76_RS10935 at 2310.924 kb on - strand, within BWI76_RS10935 at 2311.155 kb on - strand, within BWI76_RS10935 at 2312.304 kb on - strand, within BWI76_RS10945 at 2312.539 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 2,308,325 - BWI76_RS10930 0.47 -0.2 2,308,504 - BWI76_RS10930 0.58 +0.3 2,308,544 + BWI76_RS10930 0.61 -0.5 2,308,633 - BWI76_RS10930 0.66 -0.2 2,308,882 + BWI76_RS10930 0.82 -2.6 2,309,377 + -2.3 2,309,383 - -0.6 2,309,655 - BWI76_RS10935 0.20 -2.0 2,309,778 - BWI76_RS10935 0.25 -3.4 2,309,847 + BWI76_RS10935 0.28 -1.3 2,310,070 - BWI76_RS10935 0.36 +0.8 2,310,385 + BWI76_RS10935 0.49 -1.9 2,310,395 - BWI76_RS10935 0.49 -0.2 2,310,924 - BWI76_RS10935 0.70 -1.2 2,311,155 - BWI76_RS10935 0.79 +0.8 2,312,304 - BWI76_RS10945 0.86 +0.1 2,312,539 - -0.3
Or see this region's nucleotide sequence