Experiment: RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09770 and BWI76_RS09775 overlap by 68 nucleotides BWI76_RS09775 and BWI76_RS09780 are separated by 137 nucleotides BWI76_RS09780 and BWI76_RS09785 are separated by 150 nucleotides BWI76_RS09785 and BWI76_RS09790 are separated by 215 nucleotides
BWI76_RS09765: BWI76_RS09765 - metalloprotease, at 2,048,747 to 2,049,514
_RS09765
BWI76_RS09770: BWI76_RS09770 - hypothetical protein, at 2,049,461 to 2,049,753
_RS09770
BWI76_RS09775: BWI76_RS09775 - cytidylate kinase, at 2,049,686 to 2,050,369
_RS09775
BWI76_RS09780: BWI76_RS09780 - 30S ribosomal protein S1, at 2,050,507 to 2,052,180
_RS09780
BWI76_RS09785: BWI76_RS09785 - integration host factor subunit beta, at 2,052,331 to 2,052,618
_RS09785
BWI76_RS09790: BWI76_RS09790 - ComEC family protein, at 2,052,834 to 2,055,089
_RS09790
Position (kb)
2050
2051
2052
2053 Strain fitness (log2 ratio)
-1
0
1 at 2049.624 kb on - strand, within BWI76_RS09770 at 2052.284 kb on + strand at 2052.704 kb on - strand at 2052.887 kb on - strand at 2052.918 kb on + strand at 2052.962 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 2,049,624 - BWI76_RS09770 0.56 -1.2 2,052,284 + -1.1 2,052,704 - +0.5 2,052,887 - +1.5 2,052,918 + +0.8 2,052,962 + -0.6
Or see this region's nucleotide sequence