Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09730

Experiment: RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09725 and BWI76_RS09730 are separated by 53 nucleotidesBWI76_RS09730 and BWI76_RS09735 are separated by 203 nucleotides BWI76_RS09725: BWI76_RS09725 - MurR/RpiR family transcriptional regulator, at 2,037,972 to 2,038,829 _RS09725 BWI76_RS09730: BWI76_RS09730 - pyruvate formate lyase 1-activating protein, at 2,038,883 to 2,039,623 _RS09730 BWI76_RS09735: BWI76_RS09735 - formate acetyltransferase, at 2,039,827 to 2,042,109 _RS09735 Position (kb) 2038 2039 2040Strain fitness (log2 ratio) -2 -1 0 1at 2038.181 kb on + strand, within BWI76_RS09725at 2038.544 kb on + strand, within BWI76_RS09725at 2038.585 kb on + strand, within BWI76_RS09725at 2038.785 kb on + strandat 2038.881 kb on + strandat 2039.113 kb on - strand, within BWI76_RS09730at 2039.385 kb on - strand, within BWI76_RS09730at 2039.572 kb on - strandat 2039.746 kb on - strandat 2039.846 kb on - strandat 2039.846 kb on - strandat 2039.900 kb on + strandat 2040.199 kb on - strand, within BWI76_RS09735at 2040.336 kb on - strand, within BWI76_RS09735at 2040.336 kb on - strand, within BWI76_RS09735at 2040.562 kb on + strand, within BWI76_RS09735

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
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2,038,181 + BWI76_RS09725 0.24 +0.9
2,038,544 + BWI76_RS09725 0.67 +0.2
2,038,585 + BWI76_RS09725 0.71 -1.0
2,038,785 + +0.0
2,038,881 + -2.3
2,039,113 - BWI76_RS09730 0.31 -0.1
2,039,385 - BWI76_RS09730 0.68 -1.4
2,039,572 - -1.1
2,039,746 - -1.2
2,039,846 - -0.6
2,039,846 - -0.4
2,039,900 + +0.9
2,040,199 - BWI76_RS09735 0.16 -0.1
2,040,336 - BWI76_RS09735 0.22 -0.8
2,040,336 - BWI76_RS09735 0.22 -0.4
2,040,562 + BWI76_RS09735 0.32 -0.9

Or see this region's nucleotide sequence