Experiment: RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08255 and BWI76_RS08260 are separated by 97 nucleotides BWI76_RS08260 and BWI76_RS08265 are separated by 129 nucleotides BWI76_RS08265 and BWI76_RS08270 are separated by 291 nucleotides
BWI76_RS08255: BWI76_RS08255 - tricarballylate dehydrogenase, at 1,747,578 to 1,748,981
_RS08255
BWI76_RS08260: BWI76_RS08260 - LysR family transcriptional regulator, at 1,749,079 to 1,750,005
_RS08260
BWI76_RS08265: BWI76_RS08265 - transcriptional repressor, at 1,750,135 to 1,750,587
_RS08265
BWI76_RS08270: BWI76_RS08270 - flavodoxin, at 1,750,879 to 1,751,508
_RS08270
Position (kb)
1749
1750
1751 Strain fitness (log2 ratio)
-1
0
1 at 1748.208 kb on + strand, within BWI76_RS08255 at 1748.216 kb on - strand, within BWI76_RS08255 at 1748.299 kb on + strand, within BWI76_RS08255 at 1748.336 kb on + strand, within BWI76_RS08255 at 1748.344 kb on - strand, within BWI76_RS08255 at 1748.584 kb on + strand, within BWI76_RS08255 at 1748.660 kb on + strand, within BWI76_RS08255 at 1748.666 kb on + strand, within BWI76_RS08255 at 1749.594 kb on + strand, within BWI76_RS08260 at 1749.845 kb on - strand, within BWI76_RS08260 at 1750.030 kb on - strand at 1750.044 kb on + strand at 1750.688 kb on + strand at 1750.810 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 1,748,208 + BWI76_RS08255 0.45 +0.0 1,748,216 - BWI76_RS08255 0.45 -0.2 1,748,299 + BWI76_RS08255 0.51 +0.8 1,748,336 + BWI76_RS08255 0.54 -0.8 1,748,344 - BWI76_RS08255 0.55 -0.5 1,748,584 + BWI76_RS08255 0.72 +0.9 1,748,660 + BWI76_RS08255 0.77 -0.3 1,748,666 + BWI76_RS08255 0.77 +0.4 1,749,594 + BWI76_RS08260 0.56 +1.3 1,749,845 - BWI76_RS08260 0.83 +0.4 1,750,030 - +0.9 1,750,044 + -0.4 1,750,688 + -0.1 1,750,810 + -0.2
Or see this region's nucleotide sequence