Experiment: RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07615 and BWI76_RS07620 are separated by 10 nucleotides BWI76_RS07620 and BWI76_RS07625 overlap by 84 nucleotides BWI76_RS07625 and BWI76_RS07630 overlap by 4 nucleotides
BWI76_RS07615: BWI76_RS07615 - betaine-aldehyde dehydrogenase, at 1,613,138 to 1,614,610
_RS07615
BWI76_RS07620: BWI76_RS07620 - transcriptional regulator BetI, at 1,614,621 to 1,615,214
_RS07620
BWI76_RS07625: BWI76_RS07625 - hypothetical protein, at 1,615,131 to 1,615,346
_RS07625
BWI76_RS07630: BWI76_RS07630 - high-affinity choline transporter BetT, at 1,615,343 to 1,617,376
_RS07630
Position (kb) 1614
1615
1616 Strain fitness (log2 ratio) -1
0
1 at 1613.764 kb on - strand, within BWI76_RS07615 at 1613.769 kb on - strand, within BWI76_RS07615 at 1613.777 kb on - strand, within BWI76_RS07615 at 1614.049 kb on + strand, within BWI76_RS07615 at 1614.090 kb on - strand, within BWI76_RS07615 at 1614.458 kb on + strand, within BWI76_RS07615 at 1614.501 kb on + strand at 1614.501 kb on + strand at 1614.605 kb on + strand at 1614.702 kb on + strand, within BWI76_RS07620 at 1614.818 kb on + strand, within BWI76_RS07620 at 1615.001 kb on - strand, within BWI76_RS07620 at 1615.039 kb on + strand, within BWI76_RS07620 at 1615.467 kb on + strand at 1615.478 kb on + strand at 1615.552 kb on + strand, within BWI76_RS07630 at 1615.590 kb on + strand at 1615.730 kb on - strand, within BWI76_RS07630 at 1616.014 kb on + strand at 1616.151 kb on + strand, within BWI76_RS07630 at 1616.170 kb on + strand, within BWI76_RS07630 at 1616.186 kb on - strand, within BWI76_RS07630
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 1,613,764 - BWI76_RS07615 0.42 -0.3 1,613,769 - BWI76_RS07615 0.43 -1.1 1,613,777 - BWI76_RS07615 0.43 +0.5 1,614,049 + BWI76_RS07615 0.62 +0.0 1,614,090 - BWI76_RS07615 0.65 -0.3 1,614,458 + BWI76_RS07615 0.90 -1.1 1,614,501 + +0.1 1,614,501 + +1.0 1,614,605 + +0.9 1,614,702 + BWI76_RS07620 0.14 +0.3 1,614,818 + BWI76_RS07620 0.33 -0.9 1,615,001 - BWI76_RS07620 0.64 +0.8 1,615,039 + BWI76_RS07620 0.70 +1.4 1,615,467 + +0.4 1,615,478 + +0.3 1,615,552 + BWI76_RS07630 0.10 -0.0 1,615,590 + +0.9 1,615,730 - BWI76_RS07630 0.19 +0.8 1,616,014 + -0.5 1,616,151 + BWI76_RS07630 0.40 +0.1 1,616,170 + BWI76_RS07630 0.41 -0.7 1,616,186 - BWI76_RS07630 0.41 -0.6
Or see this region's nucleotide sequence