Experiment: RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS05910 and BWI76_RS05915 are separated by 926 nucleotides BWI76_RS05915 and BWI76_RS05920 are separated by 152 nucleotides BWI76_RS05920 and BWI76_RS05925 are separated by 60 nucleotides
BWI76_RS05910: BWI76_RS05910 - phosphonate ABC transporter ATP-binding protein, at 1,241,703 to 1,242,545
_RS05910
BWI76_RS05915: BWI76_RS05915 - helix-turn-helix transcriptional regulator, at 1,243,472 to 1,244,014
_RS05915
BWI76_RS05920: BWI76_RS05920 - fimbrillin MatB, at 1,244,167 to 1,244,754
_RS05920
BWI76_RS05925: BWI76_RS05925 - hypothetical protein, at 1,244,815 to 1,245,483
_RS05925
Position (kb) 1243
1244
1245 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1242.484 kb on + strand at 1242.484 kb on + strand at 1242.484 kb on + strand at 1242.484 kb on + strand at 1242.484 kb on + strand at 1242.484 kb on + strand at 1242.484 kb on + strand at 1242.484 kb on + strand at 1242.484 kb on + strand at 1242.484 kb on + strand at 1242.492 kb on - strand at 1242.492 kb on - strand at 1242.492 kb on - strand at 1242.492 kb on - strand at 1242.530 kb on + strand at 1242.592 kb on + strand at 1242.619 kb on - strand at 1242.629 kb on - strand at 1242.644 kb on + strand at 1242.652 kb on - strand at 1242.672 kb on + strand at 1242.677 kb on - strand at 1242.677 kb on - strand at 1242.678 kb on + strand at 1242.678 kb on + strand at 1242.686 kb on - strand at 1242.686 kb on - strand at 1242.686 kb on - strand at 1242.700 kb on + strand at 1242.727 kb on + strand at 1242.780 kb on + strand at 1242.780 kb on + strand at 1242.800 kb on - strand at 1242.807 kb on - strand at 1242.828 kb on + strand at 1242.848 kb on - strand at 1242.854 kb on + strand at 1242.858 kb on - strand at 1242.860 kb on + strand at 1242.861 kb on + strand at 1242.871 kb on + strand at 1242.877 kb on + strand at 1242.879 kb on - strand at 1242.882 kb on + strand at 1242.908 kb on + strand at 1242.960 kb on + strand at 1243.392 kb on + strand at 1243.400 kb on - strand at 1243.400 kb on - strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.407 kb on + strand at 1243.409 kb on + strand at 1243.414 kb on + strand at 1243.415 kb on - strand at 1243.415 kb on - strand at 1243.415 kb on - strand at 1243.415 kb on - strand at 1243.415 kb on - strand at 1243.417 kb on + strand at 1243.417 kb on + strand at 1243.419 kb on + strand at 1243.419 kb on + strand at 1243.419 kb on + strand at 1243.421 kb on + strand at 1243.421 kb on + strand at 1243.424 kb on - strand at 1243.426 kb on + strand at 1243.426 kb on + strand at 1243.426 kb on + strand at 1243.426 kb on + strand at 1243.429 kb on + strand at 1243.436 kb on + strand at 1243.444 kb on - strand at 1243.445 kb on + strand at 1243.445 kb on + strand at 1243.452 kb on + strand at 1243.511 kb on + strand at 1243.664 kb on - strand, within BWI76_RS05915 at 1243.675 kb on + strand, within BWI76_RS05915 at 1243.711 kb on + strand, within BWI76_RS05915 at 1243.749 kb on + strand, within BWI76_RS05915 at 1243.765 kb on + strand, within BWI76_RS05915 at 1243.884 kb on + strand at 1243.949 kb on + strand, within BWI76_RS05915 at 1243.957 kb on - strand, within BWI76_RS05915 at 1243.963 kb on + strand at 1243.996 kb on + strand at 1244.011 kb on + strand at 1244.050 kb on + strand at 1244.050 kb on + strand at 1244.093 kb on + strand at 1244.093 kb on + strand at 1244.093 kb on + strand at 1244.093 kb on + strand at 1244.093 kb on + strand at 1244.093 kb on + strand at 1244.094 kb on + strand at 1244.094 kb on + strand at 1244.095 kb on + strand at 1244.098 kb on + strand at 1244.098 kb on + strand at 1244.098 kb on + strand at 1244.098 kb on + strand at 1244.098 kb on + strand at 1244.101 kb on - strand at 1244.101 kb on - strand at 1244.101 kb on - strand at 1244.106 kb on - strand at 1244.106 kb on - strand at 1244.117 kb on + strand at 1244.122 kb on + strand at 1244.122 kb on + strand at 1244.124 kb on + strand at 1244.128 kb on - strand at 1244.130 kb on - strand at 1244.131 kb on + strand at 1244.131 kb on + strand at 1244.186 kb on + strand at 1244.194 kb on - strand at 1244.218 kb on + strand at 1244.233 kb on + strand, within BWI76_RS05920 at 1244.238 kb on + strand, within BWI76_RS05920 at 1244.239 kb on - strand at 1244.246 kb on - strand, within BWI76_RS05920 at 1244.252 kb on - strand, within BWI76_RS05920 at 1244.262 kb on - strand, within BWI76_RS05920 at 1244.297 kb on + strand, within BWI76_RS05920 at 1244.301 kb on + strand, within BWI76_RS05920 at 1244.311 kb on + strand, within BWI76_RS05920 at 1244.338 kb on + strand, within BWI76_RS05920 at 1244.346 kb on + strand, within BWI76_RS05920 at 1244.346 kb on - strand, within BWI76_RS05920 at 1244.414 kb on + strand, within BWI76_RS05920 at 1244.465 kb on + strand, within BWI76_RS05920 at 1244.583 kb on + strand, within BWI76_RS05920 at 1244.589 kb on + strand, within BWI76_RS05920 at 1244.599 kb on - strand, within BWI76_RS05920 at 1244.627 kb on + strand, within BWI76_RS05920 at 1244.635 kb on - strand, within BWI76_RS05920 at 1244.740 kb on + strand at 1244.748 kb on - strand at 1244.798 kb on - strand at 1244.848 kb on - strand at 1245.003 kb on - strand, within BWI76_RS05925
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 1,242,484 + +1.0 1,242,484 + -0.4 1,242,484 + -1.1 1,242,484 + -0.3 1,242,484 + -0.8 1,242,484 + +0.1 1,242,484 + -0.5 1,242,484 + +0.7 1,242,484 + +0.4 1,242,484 + +0.1 1,242,492 - -0.6 1,242,492 - -1.7 1,242,492 - +0.5 1,242,492 - -0.7 1,242,530 + -1.6 1,242,592 + -1.0 1,242,619 - +1.4 1,242,629 - -0.2 1,242,644 + -0.6 1,242,652 - -0.0 1,242,672 + -0.2 1,242,677 - -0.9 1,242,677 - -1.3 1,242,678 + -1.0 1,242,678 + -0.2 1,242,686 - +0.3 1,242,686 - +0.9 1,242,686 - +0.5 1,242,700 + +3.4 1,242,727 + -0.6 1,242,780 + -1.0 1,242,780 + -0.0 1,242,800 - -1.1 1,242,807 - +1.0 1,242,828 + -3.1 1,242,848 - +1.0 1,242,854 + -0.6 1,242,858 - -1.3 1,242,860 + -0.7 1,242,861 + -0.7 1,242,871 + -0.0 1,242,877 + +1.0 1,242,879 - -1.6 1,242,882 + -0.0 1,242,908 + +1.6 1,242,960 + -1.3 1,243,392 + +1.0 1,243,400 - +1.0 1,243,400 - -0.0 1,243,407 + +1.0 1,243,407 + -0.1 1,243,407 + -0.6 1,243,407 + -0.8 1,243,407 + -0.8 1,243,407 + -0.0 1,243,407 + +1.0 1,243,407 + -0.9 1,243,407 + +0.9 1,243,407 + -1.0 1,243,407 + -0.3 1,243,407 + -1.0 1,243,407 + -0.6 1,243,407 + -0.0 1,243,407 + -1.0 1,243,407 + +2.0 1,243,407 + -0.0 1,243,407 + +0.3 1,243,407 + -0.0 1,243,407 + -0.5 1,243,407 + -0.6 1,243,407 + -0.1 1,243,407 + +1.0 1,243,407 + +2.0 1,243,407 + -1.2 1,243,407 + -0.0 1,243,407 + -0.6 1,243,407 + +2.3 1,243,407 + -0.2 1,243,407 + -1.8 1,243,407 + +0.8 1,243,407 + +1.0 1,243,407 + -0.4 1,243,407 + +1.0 1,243,407 + +0.3 1,243,407 + -0.5 1,243,407 + +0.6 1,243,407 + -1.8 1,243,407 + -0.0 1,243,407 + -1.0 1,243,407 + -2.3 1,243,407 + +0.9 1,243,407 + +0.5 1,243,407 + -0.0 1,243,407 + -2.1 1,243,409 + -0.9 1,243,414 + -0.8 1,243,415 - +1.0 1,243,415 - -1.0 1,243,415 - -1.4 1,243,415 - -0.0 1,243,415 - +1.0 1,243,417 + -0.4 1,243,417 + -0.2 1,243,419 + -1.3 1,243,419 + -1.4 1,243,419 + +2.0 1,243,421 + +0.8 1,243,421 + -0.2 1,243,424 - +0.7 1,243,426 + +1.0 1,243,426 + -0.1 1,243,426 + -0.9 1,243,426 + -0.5 1,243,429 + +0.5 1,243,436 + -1.3 1,243,444 - +0.4 1,243,445 + -1.3 1,243,445 + -1.0 1,243,452 + -1.3 1,243,511 + -0.0 1,243,664 - BWI76_RS05915 0.35 -1.6 1,243,675 + BWI76_RS05915 0.37 -0.4 1,243,711 + BWI76_RS05915 0.44 -1.1 1,243,749 + BWI76_RS05915 0.51 -0.6 1,243,765 + BWI76_RS05915 0.54 -1.6 1,243,884 + +1.0 1,243,949 + BWI76_RS05915 0.88 -0.0 1,243,957 - BWI76_RS05915 0.89 -0.6 1,243,963 + -2.3 1,243,996 + +0.2 1,244,011 + -0.9 1,244,050 + -0.2 1,244,050 + -0.4 1,244,093 + -0.4 1,244,093 + +0.3 1,244,093 + -0.5 1,244,093 + -1.0 1,244,093 + -0.0 1,244,093 + -1.2 1,244,094 + +2.0 1,244,094 + +0.3 1,244,095 + +0.1 1,244,098 + +0.4 1,244,098 + -1.6 1,244,098 + -1.9 1,244,098 + +0.2 1,244,098 + -1.7 1,244,101 - -0.0 1,244,101 - -1.3 1,244,101 - +2.0 1,244,106 - +1.0 1,244,106 - +0.0 1,244,117 + -0.1 1,244,122 + -1.1 1,244,122 + +0.3 1,244,124 + +0.0 1,244,128 - +1.0 1,244,130 - -0.6 1,244,131 + +0.0 1,244,131 + +0.2 1,244,186 + +0.6 1,244,194 - +2.6 1,244,218 + -0.3 1,244,233 + BWI76_RS05920 0.11 -0.5 1,244,238 + BWI76_RS05920 0.12 +0.4 1,244,239 - +1.0 1,244,246 - BWI76_RS05920 0.13 -0.5 1,244,252 - BWI76_RS05920 0.14 -0.2 1,244,262 - BWI76_RS05920 0.16 -2.2 1,244,297 + BWI76_RS05920 0.22 +0.2 1,244,301 + BWI76_RS05920 0.23 +0.0 1,244,311 + BWI76_RS05920 0.24 +0.2 1,244,338 + BWI76_RS05920 0.29 -2.7 1,244,346 + BWI76_RS05920 0.30 -0.2 1,244,346 - BWI76_RS05920 0.30 -0.1 1,244,414 + BWI76_RS05920 0.42 -0.5 1,244,465 + BWI76_RS05920 0.51 -1.3 1,244,583 + BWI76_RS05920 0.71 +0.3 1,244,589 + BWI76_RS05920 0.72 +0.8 1,244,599 - BWI76_RS05920 0.73 +2.6 1,244,627 + BWI76_RS05920 0.78 -0.2 1,244,635 - BWI76_RS05920 0.80 +0.3 1,244,740 + +1.5 1,244,748 - +2.0 1,244,798 - -1.5 1,244,848 - +0.1 1,245,003 - BWI76_RS05925 0.28 -0.4
Or see this region's nucleotide sequence