Experiment: RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS05060 and BWI76_RS05065 overlap by 4 nucleotides BWI76_RS05065 and BWI76_RS05070 overlap by 4 nucleotides BWI76_RS05070 and BWI76_RS05075 overlap by 1 nucleotides BWI76_RS05075 and BWI76_RS05080 are separated by 20 nucleotides
BWI76_RS05060: BWI76_RS05060 - type II secretion system protein GspJ, at 1,060,675 to 1,061,271
_RS05060
BWI76_RS05065: BWI76_RS05065 - type II secretion system protein GspI, at 1,061,268 to 1,061,633
_RS05065
BWI76_RS05070: BWI76_RS05070 - type II secretion system protein GspH, at 1,061,630 to 1,062,142
_RS05070
BWI76_RS05075: BWI76_RS05075 - type II secretion system protein GspG, at 1,062,142 to 1,062,564
_RS05075
BWI76_RS05080: BWI76_RS05080 - type II secretion protein F, at 1,062,585 to 1,063,790
_RS05080
Position (kb) 1062
1063 Strain fitness (log2 ratio) -1
0
1
2 at 1061.244 kb on + strand at 1061.244 kb on + strand at 1061.244 kb on + strand at 1061.252 kb on - strand at 1061.451 kb on - strand, within BWI76_RS05065 at 1061.780 kb on - strand, within BWI76_RS05070 at 1062.031 kb on - strand, within BWI76_RS05070 at 1062.129 kb on - strand at 1062.201 kb on + strand, within BWI76_RS05075 at 1062.687 kb on - strand at 1062.687 kb on - strand at 1062.687 kb on - strand at 1062.845 kb on + strand, within BWI76_RS05080 at 1062.942 kb on - strand, within BWI76_RS05080 at 1063.081 kb on + strand, within BWI76_RS05080 at 1063.193 kb on + strand, within BWI76_RS05080 at 1063.279 kb on - strand, within BWI76_RS05080 at 1063.339 kb on - strand, within BWI76_RS05080 at 1063.339 kb on - strand, within BWI76_RS05080 at 1063.410 kb on - strand, within BWI76_RS05080
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 1,061,244 + +0.1 1,061,244 + +0.5 1,061,244 + +0.6 1,061,252 - +1.5 1,061,451 - BWI76_RS05065 0.50 +2.0 1,061,780 - BWI76_RS05070 0.29 -0.2 1,062,031 - BWI76_RS05070 0.78 -1.0 1,062,129 - +0.5 1,062,201 + BWI76_RS05075 0.14 -1.2 1,062,687 - -0.1 1,062,687 - +0.3 1,062,687 - +0.4 1,062,845 + BWI76_RS05080 0.22 +0.0 1,062,942 - BWI76_RS05080 0.30 +0.5 1,063,081 + BWI76_RS05080 0.41 +0.3 1,063,193 + BWI76_RS05080 0.50 +0.4 1,063,279 - BWI76_RS05080 0.58 -0.1 1,063,339 - BWI76_RS05080 0.63 -0.8 1,063,339 - BWI76_RS05080 0.63 +0.5 1,063,410 - BWI76_RS05080 0.68 +0.4
Or see this region's nucleotide sequence