Experiment: RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04245 and BWI76_RS04250 are separated by 1 nucleotides BWI76_RS04250 and BWI76_RS04255 are separated by 3 nucleotides BWI76_RS04255 and BWI76_RS04260 are separated by 51 nucleotides BWI76_RS04260 and BWI76_RS04265 are separated by 77 nucleotides
BWI76_RS04245: BWI76_RS04245 - bifunctional aspartate kinase/homoserine dehydrogenase I, at 872,525 to 874,987
_RS04245
BWI76_RS04250: BWI76_RS04250 - homoserine kinase, at 874,989 to 875,918
_RS04250
BWI76_RS04255: BWI76_RS04255 - threonine synthase, at 875,922 to 877,202
_RS04255
BWI76_RS04260: BWI76_RS04260 - peroxide stress protein YaaA, at 877,254 to 878,027
_RS04260
BWI76_RS04265: BWI76_RS04265 - sodium:alanine symporter family protein, at 878,105 to 879,535
_RS04265
Position (kb) 875
876
877
878 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 874.949 kb on + strand at 875.101 kb on - strand, within BWI76_RS04250 at 875.266 kb on + strand, within BWI76_RS04250 at 875.274 kb on - strand, within BWI76_RS04250 at 875.422 kb on - strand, within BWI76_RS04250 at 875.516 kb on - strand, within BWI76_RS04250 at 875.539 kb on - strand at 875.587 kb on + strand, within BWI76_RS04250 at 875.595 kb on - strand, within BWI76_RS04250 at 875.599 kb on + strand, within BWI76_RS04250 at 875.615 kb on - strand, within BWI76_RS04250 at 875.846 kb on - strand at 875.962 kb on + strand at 875.965 kb on - strand at 875.970 kb on - strand at 875.987 kb on - strand at 876.169 kb on - strand, within BWI76_RS04255 at 876.213 kb on - strand, within BWI76_RS04255 at 876.223 kb on + strand, within BWI76_RS04255 at 876.398 kb on + strand, within BWI76_RS04255 at 876.428 kb on + strand, within BWI76_RS04255 at 876.620 kb on + strand, within BWI76_RS04255 at 876.620 kb on + strand, within BWI76_RS04255 at 876.644 kb on + strand, within BWI76_RS04255 at 876.644 kb on + strand, within BWI76_RS04255 at 876.812 kb on + strand, within BWI76_RS04255 at 876.812 kb on + strand, within BWI76_RS04255 at 876.820 kb on - strand, within BWI76_RS04255 at 876.820 kb on - strand, within BWI76_RS04255 at 877.744 kb on + strand, within BWI76_RS04260 at 877.854 kb on - strand, within BWI76_RS04260 at 877.928 kb on + strand, within BWI76_RS04260 at 878.022 kb on + strand at 878.031 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 874,949 + -2.6 875,101 - BWI76_RS04250 0.12 -4.2 875,266 + BWI76_RS04250 0.30 -3.4 875,274 - BWI76_RS04250 0.31 -5.3 875,422 - BWI76_RS04250 0.47 -3.3 875,516 - BWI76_RS04250 0.57 -4.7 875,539 - +1.1 875,587 + BWI76_RS04250 0.64 -1.5 875,595 - BWI76_RS04250 0.65 -2.9 875,599 + BWI76_RS04250 0.66 -5.4 875,615 - BWI76_RS04250 0.67 -1.2 875,846 - -3.4 875,962 + -3.3 875,965 - +0.1 875,970 - -3.5 875,987 - -5.1 876,169 - BWI76_RS04255 0.19 -2.9 876,213 - BWI76_RS04255 0.23 -2.4 876,223 + BWI76_RS04255 0.23 -5.2 876,398 + BWI76_RS04255 0.37 -2.6 876,428 + BWI76_RS04255 0.40 +1.1 876,620 + BWI76_RS04255 0.54 -5.3 876,620 + BWI76_RS04255 0.54 -2.1 876,644 + BWI76_RS04255 0.56 -4.6 876,644 + BWI76_RS04255 0.56 +0.1 876,812 + BWI76_RS04255 0.69 -6.6 876,812 + BWI76_RS04255 0.69 -4.9 876,820 - BWI76_RS04255 0.70 -2.4 876,820 - BWI76_RS04255 0.70 -3.9 877,744 + BWI76_RS04260 0.63 +0.2 877,854 - BWI76_RS04260 0.78 +0.3 877,928 + BWI76_RS04260 0.87 -1.0 878,022 + -1.0 878,031 - -0.4
Or see this region's nucleotide sequence