Experiment: RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03140 and BWI76_RS03145 are separated by 233 nucleotides BWI76_RS03145 and BWI76_RS03150 are separated by 164 nucleotides BWI76_RS03150 and BWI76_RS03155 are separated by 126 nucleotides
BWI76_RS03140: BWI76_RS03140 - alcohol dehydrogenase, at 647,173 to 648,192
_RS03140
BWI76_RS03145: BWI76_RS03145 - tRNA-Leu, at 648,426 to 648,510
_RS03145
BWI76_RS03150: BWI76_RS03150 - site-specific recombinase, phage integrase family protein, at 648,675 to 649,937
_RS03150
BWI76_RS03155: BWI76_RS03155 - hypothetical protein, at 650,064 to 650,966
_RS03155
Position (kb) 648
649
650 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 647.891 kb on + strand, within BWI76_RS03140 at 647.899 kb on - strand, within BWI76_RS03140 at 647.945 kb on + strand, within BWI76_RS03140 at 647.954 kb on + strand, within BWI76_RS03140 at 647.954 kb on + strand, within BWI76_RS03140 at 647.992 kb on + strand, within BWI76_RS03140 at 647.992 kb on + strand, within BWI76_RS03140 at 648.090 kb on - strand, within BWI76_RS03140 at 648.195 kb on - strand at 648.217 kb on + strand at 648.237 kb on - strand at 648.241 kb on + strand at 648.285 kb on - strand at 648.288 kb on - strand at 648.309 kb on - strand at 648.685 kb on + strand at 648.691 kb on + strand at 648.695 kb on + strand at 648.703 kb on - strand at 648.710 kb on + strand at 648.841 kb on + strand, within BWI76_RS03150 at 648.867 kb on - strand, within BWI76_RS03150 at 648.869 kb on + strand, within BWI76_RS03150 at 648.877 kb on - strand, within BWI76_RS03150 at 648.877 kb on - strand, within BWI76_RS03150 at 648.906 kb on + strand, within BWI76_RS03150 at 648.906 kb on + strand, within BWI76_RS03150 at 648.913 kb on + strand, within BWI76_RS03150 at 648.921 kb on - strand, within BWI76_RS03150 at 648.963 kb on + strand, within BWI76_RS03150 at 649.056 kb on - strand, within BWI76_RS03150 at 649.097 kb on + strand, within BWI76_RS03150 at 649.097 kb on + strand, within BWI76_RS03150 at 649.097 kb on + strand, within BWI76_RS03150 at 649.112 kb on + strand, within BWI76_RS03150 at 649.151 kb on + strand, within BWI76_RS03150 at 649.159 kb on - strand, within BWI76_RS03150 at 649.206 kb on + strand, within BWI76_RS03150 at 649.214 kb on - strand, within BWI76_RS03150 at 649.225 kb on + strand, within BWI76_RS03150 at 649.225 kb on + strand, within BWI76_RS03150 at 649.233 kb on - strand, within BWI76_RS03150 at 649.233 kb on - strand, within BWI76_RS03150 at 649.248 kb on - strand, within BWI76_RS03150 at 649.277 kb on + strand, within BWI76_RS03150 at 649.287 kb on + strand, within BWI76_RS03150 at 649.295 kb on - strand, within BWI76_RS03150 at 649.329 kb on + strand, within BWI76_RS03150 at 649.363 kb on + strand, within BWI76_RS03150 at 649.371 kb on - strand, within BWI76_RS03150 at 649.489 kb on - strand, within BWI76_RS03150 at 649.500 kb on - strand, within BWI76_RS03150 at 649.500 kb on - strand, within BWI76_RS03150 at 649.519 kb on - strand, within BWI76_RS03150 at 649.523 kb on + strand, within BWI76_RS03150 at 649.577 kb on + strand, within BWI76_RS03150 at 649.585 kb on - strand, within BWI76_RS03150 at 649.585 kb on - strand, within BWI76_RS03150 at 649.619 kb on - strand, within BWI76_RS03150 at 649.691 kb on + strand, within BWI76_RS03150 at 649.704 kb on + strand, within BWI76_RS03150 at 649.706 kb on + strand, within BWI76_RS03150 at 649.706 kb on + strand, within BWI76_RS03150 at 649.711 kb on + strand, within BWI76_RS03150 at 649.714 kb on - strand, within BWI76_RS03150 at 649.714 kb on - strand, within BWI76_RS03150 at 649.723 kb on + strand, within BWI76_RS03150 at 649.743 kb on + strand, within BWI76_RS03150 at 649.743 kb on + strand, within BWI76_RS03150 at 649.743 kb on + strand, within BWI76_RS03150 at 649.746 kb on - strand, within BWI76_RS03150 at 649.748 kb on + strand, within BWI76_RS03150 at 649.751 kb on - strand, within BWI76_RS03150 at 649.751 kb on - strand, within BWI76_RS03150 at 649.751 kb on - strand at 649.783 kb on + strand, within BWI76_RS03150 at 649.783 kb on + strand, within BWI76_RS03150 at 649.798 kb on - strand, within BWI76_RS03150 at 649.853 kb on - strand at 649.854 kb on + strand at 649.854 kb on + strand at 649.854 kb on + strand at 649.854 kb on + strand at 649.854 kb on + strand at 649.854 kb on + strand at 649.854 kb on + strand at 649.854 kb on + strand at 649.854 kb on + strand at 649.854 kb on + strand at 649.854 kb on + strand at 649.854 kb on + strand at 649.854 kb on + strand at 649.855 kb on - strand at 649.855 kb on - strand at 649.862 kb on - strand at 649.862 kb on - strand at 649.862 kb on - strand at 649.862 kb on - strand at 649.862 kb on - strand at 649.862 kb on - strand at 649.862 kb on - strand at 649.862 kb on - strand at 649.862 kb on - strand at 649.862 kb on - strand at 649.862 kb on - strand at 649.867 kb on - strand at 649.867 kb on - strand at 649.867 kb on - strand at 649.873 kb on + strand at 649.881 kb on - strand at 649.888 kb on + strand at 649.903 kb on - strand at 649.905 kb on + strand at 649.905 kb on + strand at 649.905 kb on + strand at 649.905 kb on - strand at 649.905 kb on - strand at 649.906 kb on - strand at 649.906 kb on - strand at 649.913 kb on - strand at 649.913 kb on - strand at 649.913 kb on - strand at 649.913 kb on - strand at 649.913 kb on - strand at 649.973 kb on + strand at 649.973 kb on + strand at 649.973 kb on + strand at 649.983 kb on + strand at 649.983 kb on + strand at 649.991 kb on - strand at 650.061 kb on - strand at 650.117 kb on - strand at 650.121 kb on + strand at 650.132 kb on + strand at 650.132 kb on + strand at 650.140 kb on - strand at 650.163 kb on + strand, within BWI76_RS03155 at 650.190 kb on + strand at 650.190 kb on + strand, within BWI76_RS03155 at 650.190 kb on + strand at 650.194 kb on + strand, within BWI76_RS03155 at 650.198 kb on + strand, within BWI76_RS03155 at 650.198 kb on + strand, within BWI76_RS03155 at 650.198 kb on - strand, within BWI76_RS03155 at 650.200 kb on + strand, within BWI76_RS03155 at 650.208 kb on - strand, within BWI76_RS03155 at 650.209 kb on - strand, within BWI76_RS03155 at 650.213 kb on + strand, within BWI76_RS03155 at 650.213 kb on + strand, within BWI76_RS03155 at 650.213 kb on + strand, within BWI76_RS03155 at 650.215 kb on + strand, within BWI76_RS03155 at 650.215 kb on + strand, within BWI76_RS03155 at 650.215 kb on + strand, within BWI76_RS03155 at 650.221 kb on + strand, within BWI76_RS03155 at 650.221 kb on - strand, within BWI76_RS03155 at 650.221 kb on - strand, within BWI76_RS03155 at 650.221 kb on - strand, within BWI76_RS03155 at 650.221 kb on - strand, within BWI76_RS03155 at 650.223 kb on - strand, within BWI76_RS03155 at 650.228 kb on + strand, within BWI76_RS03155 at 650.236 kb on + strand, within BWI76_RS03155 at 650.236 kb on + strand, within BWI76_RS03155 at 650.236 kb on + strand, within BWI76_RS03155 at 650.236 kb on + strand, within BWI76_RS03155 at 650.236 kb on + strand, within BWI76_RS03155 at 650.244 kb on - strand, within BWI76_RS03155 at 650.244 kb on - strand, within BWI76_RS03155 at 650.244 kb on - strand, within BWI76_RS03155 at 650.244 kb on - strand, within BWI76_RS03155 at 650.244 kb on - strand, within BWI76_RS03155 at 650.246 kb on + strand, within BWI76_RS03155 at 650.246 kb on + strand at 650.246 kb on + strand, within BWI76_RS03155 at 650.246 kb on + strand, within BWI76_RS03155 at 650.246 kb on + strand, within BWI76_RS03155 at 650.246 kb on + strand, within BWI76_RS03155 at 650.246 kb on + strand, within BWI76_RS03155 at 650.246 kb on + strand, within BWI76_RS03155 at 650.249 kb on - strand, within BWI76_RS03155 at 650.254 kb on - strand, within BWI76_RS03155 at 650.254 kb on - strand, within BWI76_RS03155 at 650.254 kb on - strand, within BWI76_RS03155 at 650.254 kb on - strand, within BWI76_RS03155 at 650.254 kb on - strand, within BWI76_RS03155 at 650.254 kb on - strand, within BWI76_RS03155 at 650.254 kb on - strand, within BWI76_RS03155 at 650.254 kb on - strand, within BWI76_RS03155 at 650.254 kb on - strand, within BWI76_RS03155 at 650.259 kb on + strand, within BWI76_RS03155 at 650.262 kb on - strand, within BWI76_RS03155 at 650.264 kb on - strand, within BWI76_RS03155 at 650.289 kb on - strand, within BWI76_RS03155 at 650.289 kb on - strand, within BWI76_RS03155 at 650.541 kb on + strand at 650.541 kb on + strand, within BWI76_RS03155 at 650.542 kb on + strand, within BWI76_RS03155 at 650.542 kb on + strand, within BWI76_RS03155 at 650.549 kb on - strand, within BWI76_RS03155 at 650.550 kb on - strand, within BWI76_RS03155 at 650.550 kb on - strand, within BWI76_RS03155 at 650.557 kb on + strand, within BWI76_RS03155 at 650.560 kb on - strand, within BWI76_RS03155 at 650.565 kb on - strand, within BWI76_RS03155 at 650.807 kb on - strand, within BWI76_RS03155 at 650.807 kb on - strand, within BWI76_RS03155 at 650.877 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 647,891 + BWI76_RS03140 0.70 -0.5 647,899 - BWI76_RS03140 0.71 -0.6 647,945 + BWI76_RS03140 0.76 -0.2 647,954 + BWI76_RS03140 0.77 +0.2 647,954 + BWI76_RS03140 0.77 +0.4 647,992 + BWI76_RS03140 0.80 +1.2 647,992 + BWI76_RS03140 0.80 -0.7 648,090 - BWI76_RS03140 0.90 -0.1 648,195 - +0.8 648,217 + -1.6 648,237 - -0.3 648,241 + +1.7 648,285 - +1.2 648,288 - +0.0 648,309 - +1.0 648,685 + +0.0 648,691 + -0.8 648,695 + -0.8 648,703 - -0.4 648,710 + +0.9 648,841 + BWI76_RS03150 0.13 +0.4 648,867 - BWI76_RS03150 0.15 -0.3 648,869 + BWI76_RS03150 0.15 +0.6 648,877 - BWI76_RS03150 0.16 +0.1 648,877 - BWI76_RS03150 0.16 -0.5 648,906 + BWI76_RS03150 0.18 +0.5 648,906 + BWI76_RS03150 0.18 +0.2 648,913 + BWI76_RS03150 0.19 +0.2 648,921 - BWI76_RS03150 0.19 +0.6 648,963 + BWI76_RS03150 0.23 +0.4 649,056 - BWI76_RS03150 0.30 +1.2 649,097 + BWI76_RS03150 0.33 -0.4 649,097 + BWI76_RS03150 0.33 -0.6 649,097 + BWI76_RS03150 0.33 -1.4 649,112 + BWI76_RS03150 0.35 +1.2 649,151 + BWI76_RS03150 0.38 +1.2 649,159 - BWI76_RS03150 0.38 -0.1 649,206 + BWI76_RS03150 0.42 -1.4 649,214 - BWI76_RS03150 0.43 +0.0 649,225 + BWI76_RS03150 0.44 +0.7 649,225 + BWI76_RS03150 0.44 -0.8 649,233 - BWI76_RS03150 0.44 +0.1 649,233 - BWI76_RS03150 0.44 +2.8 649,248 - BWI76_RS03150 0.45 -0.7 649,277 + BWI76_RS03150 0.48 -1.1 649,287 + BWI76_RS03150 0.48 +0.3 649,295 - BWI76_RS03150 0.49 -0.6 649,329 + BWI76_RS03150 0.52 -0.1 649,363 + BWI76_RS03150 0.54 -0.6 649,371 - BWI76_RS03150 0.55 +0.3 649,489 - BWI76_RS03150 0.64 +0.6 649,500 - BWI76_RS03150 0.65 -0.9 649,500 - BWI76_RS03150 0.65 +0.1 649,519 - BWI76_RS03150 0.67 +1.2 649,523 + BWI76_RS03150 0.67 +0.1 649,577 + BWI76_RS03150 0.71 -1.3 649,585 - BWI76_RS03150 0.72 +0.2 649,585 - BWI76_RS03150 0.72 -0.5 649,619 - BWI76_RS03150 0.75 -1.1 649,691 + BWI76_RS03150 0.80 -0.5 649,704 + BWI76_RS03150 0.81 -1.3 649,706 + BWI76_RS03150 0.82 -0.9 649,706 + BWI76_RS03150 0.82 -0.5 649,711 + BWI76_RS03150 0.82 +0.1 649,714 - BWI76_RS03150 0.82 +2.3 649,714 - BWI76_RS03150 0.82 -1.8 649,723 + BWI76_RS03150 0.83 -0.6 649,743 + BWI76_RS03150 0.85 -2.3 649,743 + BWI76_RS03150 0.85 -1.1 649,743 + BWI76_RS03150 0.85 +0.1 649,746 - BWI76_RS03150 0.85 -3.1 649,748 + BWI76_RS03150 0.85 -1.1 649,751 - BWI76_RS03150 0.85 -1.4 649,751 - BWI76_RS03150 0.85 -0.2 649,751 - -0.4 649,783 + BWI76_RS03150 0.88 -1.4 649,783 + BWI76_RS03150 0.88 -0.4 649,798 - BWI76_RS03150 0.89 +1.2 649,853 - -1.6 649,854 + +0.5 649,854 + -0.3 649,854 + -0.2 649,854 + -0.1 649,854 + +1.7 649,854 + +0.9 649,854 + -0.2 649,854 + +0.2 649,854 + +1.2 649,854 + -1.1 649,854 + -1.1 649,854 + -0.1 649,854 + +1.2 649,855 - +1.2 649,855 - -0.5 649,862 - -0.8 649,862 - +1.2 649,862 - +0.2 649,862 - -1.1 649,862 - -0.4 649,862 - +0.3 649,862 - -0.5 649,862 - +0.6 649,862 - +0.1 649,862 - -0.3 649,862 - +1.8 649,867 - -1.1 649,867 - -0.7 649,867 - +0.4 649,873 + -1.4 649,881 - -0.4 649,888 + -1.5 649,903 - +1.2 649,905 + +0.5 649,905 + +1.0 649,905 + +1.8 649,905 - +0.0 649,905 - -0.4 649,906 - +0.0 649,906 - -0.1 649,913 - +1.2 649,913 - +0.6 649,913 - +1.2 649,913 - -0.5 649,913 - -0.3 649,973 + +0.3 649,973 + +0.3 649,973 + -1.4 649,983 + -0.7 649,983 + -0.2 649,991 - -0.4 650,061 - -0.8 650,117 - -1.1 650,121 + +0.1 650,132 + +0.4 650,132 + +1.2 650,140 - -0.5 650,163 + BWI76_RS03155 0.11 -1.9 650,190 + -0.4 650,190 + BWI76_RS03155 0.14 -1.4 650,190 + +2.2 650,194 + BWI76_RS03155 0.14 +0.3 650,198 + BWI76_RS03155 0.15 -0.3 650,198 + BWI76_RS03155 0.15 -2.9 650,198 - BWI76_RS03155 0.15 -0.4 650,200 + BWI76_RS03155 0.15 -2.3 650,208 - BWI76_RS03155 0.16 -0.7 650,209 - BWI76_RS03155 0.16 -0.4 650,213 + BWI76_RS03155 0.17 +0.5 650,213 + BWI76_RS03155 0.17 -0.1 650,213 + BWI76_RS03155 0.17 +0.0 650,215 + BWI76_RS03155 0.17 +0.0 650,215 + BWI76_RS03155 0.17 +0.2 650,215 + BWI76_RS03155 0.17 -0.4 650,221 + BWI76_RS03155 0.17 -0.8 650,221 - BWI76_RS03155 0.17 -0.1 650,221 - BWI76_RS03155 0.17 -0.8 650,221 - BWI76_RS03155 0.17 -0.8 650,221 - BWI76_RS03155 0.17 -0.1 650,223 - BWI76_RS03155 0.18 -0.7 650,228 + BWI76_RS03155 0.18 +0.3 650,236 + BWI76_RS03155 0.19 +0.2 650,236 + BWI76_RS03155 0.19 +0.2 650,236 + BWI76_RS03155 0.19 -0.3 650,236 + BWI76_RS03155 0.19 -0.7 650,236 + BWI76_RS03155 0.19 +1.8 650,244 - BWI76_RS03155 0.20 +0.2 650,244 - BWI76_RS03155 0.20 +1.2 650,244 - BWI76_RS03155 0.20 +0.3 650,244 - BWI76_RS03155 0.20 -2.4 650,244 - BWI76_RS03155 0.20 -0.2 650,246 + BWI76_RS03155 0.20 -1.0 650,246 + -0.8 650,246 + BWI76_RS03155 0.20 -2.1 650,246 + BWI76_RS03155 0.20 -1.5 650,246 + BWI76_RS03155 0.20 +1.1 650,246 + BWI76_RS03155 0.20 -0.3 650,246 + BWI76_RS03155 0.20 +0.2 650,246 + BWI76_RS03155 0.20 +0.5 650,249 - BWI76_RS03155 0.20 +1.0 650,254 - BWI76_RS03155 0.21 -1.8 650,254 - BWI76_RS03155 0.21 +1.8 650,254 - BWI76_RS03155 0.21 -0.1 650,254 - BWI76_RS03155 0.21 +0.0 650,254 - BWI76_RS03155 0.21 -1.4 650,254 - BWI76_RS03155 0.21 -0.1 650,254 - BWI76_RS03155 0.21 -0.5 650,254 - BWI76_RS03155 0.21 -0.9 650,254 - BWI76_RS03155 0.21 +1.4 650,259 + BWI76_RS03155 0.22 +0.8 650,262 - BWI76_RS03155 0.22 -1.1 650,264 - BWI76_RS03155 0.22 -1.4 650,289 - BWI76_RS03155 0.25 -0.3 650,289 - BWI76_RS03155 0.25 -0.1 650,541 + +2.2 650,541 + BWI76_RS03155 0.53 -0.4 650,542 + BWI76_RS03155 0.53 -0.4 650,542 + BWI76_RS03155 0.53 +1.2 650,549 - BWI76_RS03155 0.54 +0.6 650,550 - BWI76_RS03155 0.54 -0.5 650,550 - BWI76_RS03155 0.54 -1.4 650,557 + BWI76_RS03155 0.55 -0.3 650,560 - BWI76_RS03155 0.55 +0.6 650,565 - BWI76_RS03155 0.55 -0.2 650,807 - BWI76_RS03155 0.82 +1.2 650,807 - BWI76_RS03155 0.82 +0.9 650,877 + -0.2
Or see this region's nucleotide sequence