Experiment: RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02925 and BWI76_RS02930 are separated by 17 nucleotides BWI76_RS02930 and BWI76_RS02935 are separated by 257 nucleotides BWI76_RS02935 and BWI76_RS02940 are separated by 369 nucleotides
BWI76_RS02925: BWI76_RS02925 - type IV secretion protein Rhs, at 596,405 to 598,123
_RS02925
BWI76_RS02930: BWI76_RS02930 - anaerobic ribonucleoside-triphosphate reductase activating protein, at 598,141 to 598,605
_RS02930
BWI76_RS02935: BWI76_RS02935 - anaerobic ribonucleoside triphosphate reductase, at 598,863 to 601,001
_RS02935
BWI76_RS02940: BWI76_RS02940 - RpiR family transcriptional regulator, at 601,371 to 602,114
_RS02940
Position (kb) 598
599
600
601
602 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 597.921 kb on - strand, within BWI76_RS02925 at 598.153 kb on - strand at 598.281 kb on + strand, within BWI76_RS02930 at 598.521 kb on + strand, within BWI76_RS02930 at 598.552 kb on + strand, within BWI76_RS02930 at 598.559 kb on + strand at 598.591 kb on - strand at 598.853 kb on - strand at 598.924 kb on + strand at 599.019 kb on + strand at 599.027 kb on - strand at 599.118 kb on + strand, within BWI76_RS02935 at 599.143 kb on + strand, within BWI76_RS02935 at 599.144 kb on + strand, within BWI76_RS02935 at 599.152 kb on - strand, within BWI76_RS02935 at 599.209 kb on + strand, within BWI76_RS02935 at 599.251 kb on - strand, within BWI76_RS02935 at 599.261 kb on - strand, within BWI76_RS02935 at 599.376 kb on + strand, within BWI76_RS02935 at 599.381 kb on + strand, within BWI76_RS02935 at 599.381 kb on + strand, within BWI76_RS02935 at 599.388 kb on + strand, within BWI76_RS02935 at 599.389 kb on - strand, within BWI76_RS02935 at 599.465 kb on + strand, within BWI76_RS02935 at 599.610 kb on - strand, within BWI76_RS02935 at 599.610 kb on - strand, within BWI76_RS02935 at 599.788 kb on - strand, within BWI76_RS02935 at 599.802 kb on + strand, within BWI76_RS02935 at 599.815 kb on - strand, within BWI76_RS02935 at 599.959 kb on - strand, within BWI76_RS02935 at 600.233 kb on - strand, within BWI76_RS02935 at 600.331 kb on + strand, within BWI76_RS02935 at 600.406 kb on - strand, within BWI76_RS02935 at 600.580 kb on + strand, within BWI76_RS02935 at 600.620 kb on + strand, within BWI76_RS02935 at 600.620 kb on + strand, within BWI76_RS02935 at 600.670 kb on + strand, within BWI76_RS02935 at 600.678 kb on - strand, within BWI76_RS02935 at 600.755 kb on - strand, within BWI76_RS02935 at 600.997 kb on - strand at 601.009 kb on + strand at 601.049 kb on - strand at 601.115 kb on + strand at 601.156 kb on - strand at 601.285 kb on - strand at 601.395 kb on - strand at 601.442 kb on - strand at 601.446 kb on - strand, within BWI76_RS02940 at 601.535 kb on + strand, within BWI76_RS02940 at 601.699 kb on + strand, within BWI76_RS02940 at 601.887 kb on - strand, within BWI76_RS02940
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 597,921 - BWI76_RS02925 0.88 -0.8 598,153 - -1.6 598,281 + BWI76_RS02930 0.30 -0.3 598,521 + BWI76_RS02930 0.82 +0.1 598,552 + BWI76_RS02930 0.88 +0.1 598,559 + -0.1 598,591 - +0.3 598,853 - +0.1 598,924 + -1.1 599,019 + -0.8 599,027 - +0.1 599,118 + BWI76_RS02935 0.12 -1.5 599,143 + BWI76_RS02935 0.13 +1.7 599,144 + BWI76_RS02935 0.13 -1.4 599,152 - BWI76_RS02935 0.14 -1.0 599,209 + BWI76_RS02935 0.16 -1.0 599,251 - BWI76_RS02935 0.18 -0.4 599,261 - BWI76_RS02935 0.19 -0.1 599,376 + BWI76_RS02935 0.24 -1.0 599,381 + BWI76_RS02935 0.24 +0.6 599,381 + BWI76_RS02935 0.24 -0.8 599,388 + BWI76_RS02935 0.25 -1.4 599,389 - BWI76_RS02935 0.25 -1.2 599,465 + BWI76_RS02935 0.28 -0.7 599,610 - BWI76_RS02935 0.35 +2.5 599,610 - BWI76_RS02935 0.35 -0.5 599,788 - BWI76_RS02935 0.43 -0.8 599,802 + BWI76_RS02935 0.44 -1.0 599,815 - BWI76_RS02935 0.45 -1.3 599,959 - BWI76_RS02935 0.51 -2.1 600,233 - BWI76_RS02935 0.64 +0.1 600,331 + BWI76_RS02935 0.69 -0.1 600,406 - BWI76_RS02935 0.72 -0.5 600,580 + BWI76_RS02935 0.80 +1.0 600,620 + BWI76_RS02935 0.82 +0.3 600,620 + BWI76_RS02935 0.82 +0.2 600,670 + BWI76_RS02935 0.84 +0.1 600,678 - BWI76_RS02935 0.85 -2.9 600,755 - BWI76_RS02935 0.88 -2.3 600,997 - +0.5 601,009 + -0.6 601,049 - +0.0 601,115 + -0.8 601,156 - +0.4 601,285 - +0.2 601,395 - +0.6 601,442 - +0.1 601,446 - BWI76_RS02940 0.10 +0.7 601,535 + BWI76_RS02940 0.22 +0.2 601,699 + BWI76_RS02940 0.44 +0.7 601,887 - BWI76_RS02940 0.69 +0.6
Or see this region's nucleotide sequence