Experiment: RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00370 and BWI76_RS00375 are separated by 3 nucleotides BWI76_RS00375 and BWI76_RS00380 are separated by 2 nucleotides
BWI76_RS00370: BWI76_RS00370 - GTPase-activating protein, at 78,551 to 79,057
_RS00370
BWI76_RS00375: BWI76_RS00375 - hypothetical protein, at 79,061 to 79,243
_RS00375
BWI76_RS00380: BWI76_RS00380 - oxygen-independent coproporphyrinogen III oxidase, at 79,246 to 80,619
_RS00380
Position (kb) 79
80 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 78.224 kb on + strand at 78.224 kb on + strand at 78.268 kb on - strand at 78.290 kb on + strand at 78.369 kb on - strand at 78.391 kb on - strand at 78.532 kb on + strand at 78.572 kb on - strand at 78.835 kb on - strand, within BWI76_RS00370 at 78.885 kb on + strand at 78.885 kb on - strand, within BWI76_RS00370 at 78.912 kb on + strand, within BWI76_RS00370 at 78.912 kb on + strand, within BWI76_RS00370 at 78.922 kb on + strand, within BWI76_RS00370 at 78.930 kb on - strand, within BWI76_RS00370 at 78.987 kb on - strand, within BWI76_RS00370 at 79.102 kb on + strand, within BWI76_RS00375 at 79.110 kb on - strand, within BWI76_RS00375 at 79.110 kb on - strand, within BWI76_RS00375 at 79.234 kb on + strand at 79.250 kb on - strand at 79.270 kb on + strand at 79.271 kb on + strand at 79.273 kb on - strand at 79.308 kb on + strand at 79.316 kb on - strand at 79.316 kb on - strand at 79.316 kb on - strand at 79.482 kb on + strand, within BWI76_RS00380 at 79.482 kb on + strand, within BWI76_RS00380 at 79.482 kb on + strand, within BWI76_RS00380 at 79.482 kb on + strand, within BWI76_RS00380 at 79.490 kb on - strand, within BWI76_RS00380 at 79.490 kb on - strand, within BWI76_RS00380 at 79.490 kb on - strand, within BWI76_RS00380 at 79.490 kb on - strand at 79.583 kb on - strand, within BWI76_RS00380 at 79.628 kb on - strand, within BWI76_RS00380 at 79.657 kb on - strand, within BWI76_RS00380 at 79.754 kb on - strand, within BWI76_RS00380 at 79.754 kb on - strand, within BWI76_RS00380 at 79.756 kb on - strand, within BWI76_RS00380 at 79.811 kb on - strand, within BWI76_RS00380 at 79.850 kb on + strand, within BWI76_RS00380 at 79.858 kb on - strand, within BWI76_RS00380 at 79.938 kb on + strand, within BWI76_RS00380 at 79.946 kb on - strand, within BWI76_RS00380 at 80.038 kb on - strand, within BWI76_RS00380 at 80.157 kb on - strand, within BWI76_RS00380
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 78,224 + +0.3 78,224 + -0.4 78,268 - -0.1 78,290 + +2.2 78,369 - -0.2 78,391 - -1.4 78,532 + -0.2 78,572 - +0.0 78,835 - BWI76_RS00370 0.56 +0.2 78,885 + -0.4 78,885 - BWI76_RS00370 0.66 -0.7 78,912 + BWI76_RS00370 0.71 +0.2 78,912 + BWI76_RS00370 0.71 +1.2 78,922 + BWI76_RS00370 0.73 -0.4 78,930 - BWI76_RS00370 0.75 -0.6 78,987 - BWI76_RS00370 0.86 +0.3 79,102 + BWI76_RS00375 0.22 -1.6 79,110 - BWI76_RS00375 0.27 +0.6 79,110 - BWI76_RS00375 0.27 +0.9 79,234 + +1.3 79,250 - -0.4 79,270 + -1.4 79,271 + +0.8 79,273 - -0.1 79,308 + +0.2 79,316 - -0.8 79,316 - +1.2 79,316 - -1.8 79,482 + BWI76_RS00380 0.17 -1.1 79,482 + BWI76_RS00380 0.17 -0.8 79,482 + BWI76_RS00380 0.17 +1.2 79,482 + BWI76_RS00380 0.17 +1.2 79,490 - BWI76_RS00380 0.18 -0.4 79,490 - BWI76_RS00380 0.18 +1.2 79,490 - BWI76_RS00380 0.18 -0.7 79,490 - +1.2 79,583 - BWI76_RS00380 0.25 +0.2 79,628 - BWI76_RS00380 0.28 +1.2 79,657 - BWI76_RS00380 0.30 -1.6 79,754 - BWI76_RS00380 0.37 -0.9 79,754 - BWI76_RS00380 0.37 -1.7 79,756 - BWI76_RS00380 0.37 -3.4 79,811 - BWI76_RS00380 0.41 -1.8 79,850 + BWI76_RS00380 0.44 -1.1 79,858 - BWI76_RS00380 0.45 -0.4 79,938 + BWI76_RS00380 0.50 +0.1 79,946 - BWI76_RS00380 0.51 +1.6 80,038 - BWI76_RS00380 0.58 -0.3 80,157 - BWI76_RS00380 0.66 -1.1
Or see this region's nucleotide sequence