Strain Fitness in Sinorhizobium meliloti 1021 around SMc04256

Experiment: Lactitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04255 and SMc04256 are separated by 71 nucleotidesSMc04256 and SMc04257 are separated by 6 nucleotidesSMc04257 and SMc04258 are separated by 16 nucleotides SMc04255: SMc04255 - beta-mannosidase, at 2,082,053 to 2,084,548 SMc04255 SMc04256: SMc04256 - ABC transporter for D-Cellobiose and D-Salicin, ATPase component (from data), at 2,084,620 to 2,085,705 SMc04256 SMc04257: SMc04257 - ABC transporter for D-Cellobiose and D-Salicin, permease component 1 (from data), at 2,085,712 to 2,086,629 SMc04257 SMc04258: SMc04258 - ABC transporter for D-Cellobiose and D-Salicin, permease component 2 (from data), at 2,086,646 to 2,087,554 SMc04258 Position (kb) 2084 2085 2086Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2083.684 kb on + strand, within SMc04255at 2083.966 kb on - strand, within SMc04255at 2084.067 kb on + strand, within SMc04255at 2084.067 kb on + strand, within SMc04255at 2084.076 kb on + strand, within SMc04255at 2084.076 kb on + strand, within SMc04255at 2084.076 kb on + strand, within SMc04255at 2084.076 kb on + strand, within SMc04255at 2084.077 kb on - strand, within SMc04255at 2084.233 kb on - strand, within SMc04255at 2084.271 kb on + strand, within SMc04255at 2084.272 kb on - strand, within SMc04255at 2084.272 kb on - strand, within SMc04255at 2084.272 kb on - strand, within SMc04255at 2084.596 kb on + strandat 2084.596 kb on + strandat 2084.597 kb on - strandat 2084.597 kb on - strandat 2084.758 kb on + strand, within SMc04256at 2084.758 kb on + strand, within SMc04256at 2084.758 kb on + strand, within SMc04256at 2084.759 kb on - strand, within SMc04256at 2084.759 kb on - strand, within SMc04256at 2084.759 kb on - strand, within SMc04256at 2084.759 kb on - strand, within SMc04256at 2084.759 kb on - strand, within SMc04256at 2084.759 kb on - strand, within SMc04256at 2085.041 kb on + strand, within SMc04256at 2085.041 kb on + strand, within SMc04256at 2085.042 kb on - strand, within SMc04256at 2085.042 kb on - strand, within SMc04256at 2085.042 kb on - strand, within SMc04256at 2085.042 kb on - strand, within SMc04256at 2085.042 kb on - strand, within SMc04256at 2085.042 kb on - strand, within SMc04256at 2085.140 kb on + strand, within SMc04256at 2085.140 kb on + strand, within SMc04256at 2085.140 kb on + strand, within SMc04256at 2085.140 kb on + strand, within SMc04256at 2085.140 kb on + strand, within SMc04256at 2085.140 kb on + strand, within SMc04256at 2085.141 kb on - strand, within SMc04256at 2085.141 kb on - strand, within SMc04256at 2085.150 kb on + strand, within SMc04256at 2085.150 kb on + strand, within SMc04256at 2085.446 kb on + strand, within SMc04256at 2085.456 kb on - strandat 2085.456 kb on - strand, within SMc04256at 2085.456 kb on - strand, within SMc04256at 2085.694 kb on + strandat 2085.694 kb on + strandat 2085.714 kb on - strandat 2085.714 kb on - strandat 2085.770 kb on + strandat 2085.771 kb on - strandat 2085.824 kb on + strand, within SMc04257at 2085.824 kb on + strand, within SMc04257at 2085.824 kb on + strand, within SMc04257at 2085.824 kb on + strand, within SMc04257at 2085.884 kb on + strand, within SMc04257at 2085.885 kb on - strand, within SMc04257at 2085.998 kb on + strand, within SMc04257at 2085.998 kb on + strand, within SMc04257at 2085.998 kb on + strand, within SMc04257at 2085.998 kb on + strand, within SMc04257at 2085.998 kb on + strand, within SMc04257at 2086.105 kb on + strand, within SMc04257at 2086.106 kb on - strand, within SMc04257at 2086.178 kb on + strand, within SMc04257at 2086.179 kb on - strand, within SMc04257at 2086.194 kb on - strand, within SMc04257at 2086.487 kb on + strand, within SMc04257at 2086.488 kb on - strand, within SMc04257at 2086.502 kb on + strand, within SMc04257at 2086.502 kb on + strand, within SMc04257at 2086.502 kb on + strand, within SMc04257at 2086.503 kb on - strand, within SMc04257at 2086.503 kb on - strand, within SMc04257at 2086.505 kb on + strand, within SMc04257at 2086.505 kb on + strand, within SMc04257at 2086.542 kb on + strandat 2086.542 kb on + strandat 2086.543 kb on - strandat 2086.680 kb on + strandat 2086.680 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol (C)
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2,083,684 + SMc04255 0.65 +3.3
2,083,966 - SMc04255 0.77 +1.4
2,084,067 + SMc04255 0.81 +2.8
2,084,067 + SMc04255 0.81 +2.5
2,084,076 + SMc04255 0.81 +3.6
2,084,076 + SMc04255 0.81 +3.4
2,084,076 + SMc04255 0.81 +3.4
2,084,076 + SMc04255 0.81 +2.4
2,084,077 - SMc04255 0.81 -0.4
2,084,233 - SMc04255 0.87 -1.0
2,084,271 + SMc04255 0.89 +3.0
2,084,272 - SMc04255 0.89 +0.0
2,084,272 - SMc04255 0.89 +1.0
2,084,272 - SMc04255 0.89 +0.4
2,084,596 + +2.8
2,084,596 + +2.6
2,084,597 - -1.5
2,084,597 - +0.3
2,084,758 + SMc04256 0.13 -3.0
2,084,758 + SMc04256 0.13 -2.4
2,084,758 + SMc04256 0.13 -1.9
2,084,759 - SMc04256 0.13 -1.0
2,084,759 - SMc04256 0.13 -1.7
2,084,759 - SMc04256 0.13 -0.5
2,084,759 - SMc04256 0.13 -1.1
2,084,759 - SMc04256 0.13 -2.5
2,084,759 - SMc04256 0.13 -2.0
2,085,041 + SMc04256 0.39 -1.9
2,085,041 + SMc04256 0.39 -1.6
2,085,042 - SMc04256 0.39 -2.3
2,085,042 - SMc04256 0.39 -0.5
2,085,042 - SMc04256 0.39 -1.4
2,085,042 - SMc04256 0.39 -0.7
2,085,042 - SMc04256 0.39 -1.7
2,085,042 - SMc04256 0.39 -1.8
2,085,140 + SMc04256 0.48 -3.2
2,085,140 + SMc04256 0.48 -1.9
2,085,140 + SMc04256 0.48 -3.0
2,085,140 + SMc04256 0.48 -0.7
2,085,140 + SMc04256 0.48 -2.7
2,085,140 + SMc04256 0.48 -1.2
2,085,141 - SMc04256 0.48 -1.9
2,085,141 - SMc04256 0.48 -1.3
2,085,150 + SMc04256 0.49 -1.8
2,085,150 + SMc04256 0.49 -3.1
2,085,446 + SMc04256 0.76 -0.9
2,085,456 - -0.2
2,085,456 - SMc04256 0.77 -0.7
2,085,456 - SMc04256 0.77 -2.6
2,085,694 + -2.5
2,085,694 + -1.4
2,085,714 - -1.5
2,085,714 - -1.5
2,085,770 + -0.5
2,085,771 - -1.5
2,085,824 + SMc04257 0.12 -1.9
2,085,824 + SMc04257 0.12 -1.2
2,085,824 + SMc04257 0.12 -1.4
2,085,824 + SMc04257 0.12 -1.4
2,085,884 + SMc04257 0.19 -1.2
2,085,885 - SMc04257 0.19 -1.5
2,085,998 + SMc04257 0.31 -1.7
2,085,998 + SMc04257 0.31 -1.5
2,085,998 + SMc04257 0.31 -2.2
2,085,998 + SMc04257 0.31 -1.7
2,085,998 + SMc04257 0.31 -2.7
2,086,105 + SMc04257 0.43 -1.6
2,086,106 - SMc04257 0.43 -2.0
2,086,178 + SMc04257 0.51 -1.6
2,086,179 - SMc04257 0.51 -0.7
2,086,194 - SMc04257 0.53 -1.5
2,086,487 + SMc04257 0.84 -2.8
2,086,488 - SMc04257 0.85 -1.3
2,086,502 + SMc04257 0.86 -1.5
2,086,502 + SMc04257 0.86 -1.5
2,086,502 + SMc04257 0.86 -1.6
2,086,503 - SMc04257 0.86 -2.0
2,086,503 - SMc04257 0.86 -1.6
2,086,505 + SMc04257 0.86 +0.1
2,086,505 + SMc04257 0.86 -1.6
2,086,542 + -0.9
2,086,542 + -0.7
2,086,543 - -0.1
2,086,680 + -1.6
2,086,680 + -1.9

Or see this region's nucleotide sequence