Experiment: Lactitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04255 and SMc04256 are separated by 71 nucleotides SMc04256 and SMc04257 are separated by 6 nucleotides SMc04257 and SMc04258 are separated by 16 nucleotides
SMc04255: SMc04255 - beta-mannosidase, at 2,082,053 to 2,084,548
SMc04255
SMc04256: SMc04256 - ABC transporter for D-Cellobiose and D-Salicin, ATPase component (from data) , at 2,084,620 to 2,085,705
SMc04256
SMc04257: SMc04257 - ABC transporter for D-Cellobiose and D-Salicin, permease component 1 (from data) , at 2,085,712 to 2,086,629
SMc04257
SMc04258: SMc04258 - ABC transporter for D-Cellobiose and D-Salicin, permease component 2 (from data) , at 2,086,646 to 2,087,554
SMc04258
Position (kb)
2084
2085
2086 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2083.684 kb on + strand, within SMc04255 at 2083.966 kb on - strand, within SMc04255 at 2084.067 kb on + strand, within SMc04255 at 2084.067 kb on + strand, within SMc04255 at 2084.076 kb on + strand, within SMc04255 at 2084.076 kb on + strand, within SMc04255 at 2084.076 kb on + strand, within SMc04255 at 2084.076 kb on + strand, within SMc04255 at 2084.077 kb on - strand, within SMc04255 at 2084.233 kb on - strand, within SMc04255 at 2084.271 kb on + strand, within SMc04255 at 2084.272 kb on - strand, within SMc04255 at 2084.272 kb on - strand, within SMc04255 at 2084.272 kb on - strand, within SMc04255 at 2084.596 kb on + strand at 2084.596 kb on + strand at 2084.597 kb on - strand at 2084.597 kb on - strand at 2084.758 kb on + strand, within SMc04256 at 2084.758 kb on + strand, within SMc04256 at 2084.758 kb on + strand, within SMc04256 at 2084.759 kb on - strand, within SMc04256 at 2084.759 kb on - strand, within SMc04256 at 2084.759 kb on - strand, within SMc04256 at 2084.759 kb on - strand, within SMc04256 at 2084.759 kb on - strand, within SMc04256 at 2084.759 kb on - strand, within SMc04256 at 2085.041 kb on + strand, within SMc04256 at 2085.041 kb on + strand, within SMc04256 at 2085.042 kb on - strand, within SMc04256 at 2085.042 kb on - strand, within SMc04256 at 2085.042 kb on - strand, within SMc04256 at 2085.042 kb on - strand, within SMc04256 at 2085.042 kb on - strand, within SMc04256 at 2085.042 kb on - strand, within SMc04256 at 2085.140 kb on + strand, within SMc04256 at 2085.140 kb on + strand, within SMc04256 at 2085.140 kb on + strand, within SMc04256 at 2085.140 kb on + strand, within SMc04256 at 2085.140 kb on + strand, within SMc04256 at 2085.140 kb on + strand, within SMc04256 at 2085.141 kb on - strand, within SMc04256 at 2085.141 kb on - strand, within SMc04256 at 2085.150 kb on + strand, within SMc04256 at 2085.150 kb on + strand, within SMc04256 at 2085.446 kb on + strand, within SMc04256 at 2085.456 kb on - strand at 2085.456 kb on - strand, within SMc04256 at 2085.456 kb on - strand, within SMc04256 at 2085.694 kb on + strand at 2085.694 kb on + strand at 2085.714 kb on - strand at 2085.714 kb on - strand at 2085.770 kb on + strand at 2085.771 kb on - strand at 2085.824 kb on + strand, within SMc04257 at 2085.824 kb on + strand, within SMc04257 at 2085.824 kb on + strand, within SMc04257 at 2085.824 kb on + strand, within SMc04257 at 2085.884 kb on + strand, within SMc04257 at 2085.885 kb on - strand, within SMc04257 at 2085.998 kb on + strand, within SMc04257 at 2085.998 kb on + strand, within SMc04257 at 2085.998 kb on + strand, within SMc04257 at 2085.998 kb on + strand, within SMc04257 at 2085.998 kb on + strand, within SMc04257 at 2086.105 kb on + strand, within SMc04257 at 2086.106 kb on - strand, within SMc04257 at 2086.178 kb on + strand, within SMc04257 at 2086.179 kb on - strand, within SMc04257 at 2086.194 kb on - strand, within SMc04257 at 2086.487 kb on + strand, within SMc04257 at 2086.488 kb on - strand, within SMc04257 at 2086.502 kb on + strand, within SMc04257 at 2086.502 kb on + strand, within SMc04257 at 2086.502 kb on + strand, within SMc04257 at 2086.503 kb on - strand, within SMc04257 at 2086.503 kb on - strand, within SMc04257 at 2086.505 kb on + strand, within SMc04257 at 2086.505 kb on + strand, within SMc04257 at 2086.542 kb on + strand at 2086.542 kb on + strand at 2086.543 kb on - strand at 2086.680 kb on + strand at 2086.680 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol (C) remove 2,083,684 + SMc04255 0.65 +3.3 2,083,966 - SMc04255 0.77 +1.4 2,084,067 + SMc04255 0.81 +2.8 2,084,067 + SMc04255 0.81 +2.5 2,084,076 + SMc04255 0.81 +3.6 2,084,076 + SMc04255 0.81 +3.4 2,084,076 + SMc04255 0.81 +3.4 2,084,076 + SMc04255 0.81 +2.4 2,084,077 - SMc04255 0.81 -0.4 2,084,233 - SMc04255 0.87 -1.0 2,084,271 + SMc04255 0.89 +3.0 2,084,272 - SMc04255 0.89 +0.0 2,084,272 - SMc04255 0.89 +1.0 2,084,272 - SMc04255 0.89 +0.4 2,084,596 + +2.8 2,084,596 + +2.6 2,084,597 - -1.5 2,084,597 - +0.3 2,084,758 + SMc04256 0.13 -3.0 2,084,758 + SMc04256 0.13 -2.4 2,084,758 + SMc04256 0.13 -1.9 2,084,759 - SMc04256 0.13 -1.0 2,084,759 - SMc04256 0.13 -1.7 2,084,759 - SMc04256 0.13 -0.5 2,084,759 - SMc04256 0.13 -1.1 2,084,759 - SMc04256 0.13 -2.5 2,084,759 - SMc04256 0.13 -2.0 2,085,041 + SMc04256 0.39 -1.9 2,085,041 + SMc04256 0.39 -1.6 2,085,042 - SMc04256 0.39 -2.3 2,085,042 - SMc04256 0.39 -0.5 2,085,042 - SMc04256 0.39 -1.4 2,085,042 - SMc04256 0.39 -0.7 2,085,042 - SMc04256 0.39 -1.7 2,085,042 - SMc04256 0.39 -1.8 2,085,140 + SMc04256 0.48 -3.2 2,085,140 + SMc04256 0.48 -1.9 2,085,140 + SMc04256 0.48 -3.0 2,085,140 + SMc04256 0.48 -0.7 2,085,140 + SMc04256 0.48 -2.7 2,085,140 + SMc04256 0.48 -1.2 2,085,141 - SMc04256 0.48 -1.9 2,085,141 - SMc04256 0.48 -1.3 2,085,150 + SMc04256 0.49 -1.8 2,085,150 + SMc04256 0.49 -3.1 2,085,446 + SMc04256 0.76 -0.9 2,085,456 - -0.2 2,085,456 - SMc04256 0.77 -0.7 2,085,456 - SMc04256 0.77 -2.6 2,085,694 + -2.5 2,085,694 + -1.4 2,085,714 - -1.5 2,085,714 - -1.5 2,085,770 + -0.5 2,085,771 - -1.5 2,085,824 + SMc04257 0.12 -1.9 2,085,824 + SMc04257 0.12 -1.2 2,085,824 + SMc04257 0.12 -1.4 2,085,824 + SMc04257 0.12 -1.4 2,085,884 + SMc04257 0.19 -1.2 2,085,885 - SMc04257 0.19 -1.5 2,085,998 + SMc04257 0.31 -1.7 2,085,998 + SMc04257 0.31 -1.5 2,085,998 + SMc04257 0.31 -2.2 2,085,998 + SMc04257 0.31 -1.7 2,085,998 + SMc04257 0.31 -2.7 2,086,105 + SMc04257 0.43 -1.6 2,086,106 - SMc04257 0.43 -2.0 2,086,178 + SMc04257 0.51 -1.6 2,086,179 - SMc04257 0.51 -0.7 2,086,194 - SMc04257 0.53 -1.5 2,086,487 + SMc04257 0.84 -2.8 2,086,488 - SMc04257 0.85 -1.3 2,086,502 + SMc04257 0.86 -1.5 2,086,502 + SMc04257 0.86 -1.5 2,086,502 + SMc04257 0.86 -1.6 2,086,503 - SMc04257 0.86 -2.0 2,086,503 - SMc04257 0.86 -1.6 2,086,505 + SMc04257 0.86 +0.1 2,086,505 + SMc04257 0.86 -1.6 2,086,542 + -0.9 2,086,542 + -0.7 2,086,543 - -0.1 2,086,680 + -1.6 2,086,680 + -1.9
Or see this region's nucleotide sequence