Experiment: Lactitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04253 and SMc04254 are separated by 16 nucleotides SMc04254 and SMc04255 are separated by 56 nucleotides
SMc04253: SMc04253 - oxidoreductase, at 2,080,085 to 2,081,218
SMc04253
SMc04254: SMc04254 - hypothetical protein, at 2,081,235 to 2,081,996
SMc04254
SMc04255: SMc04255 - beta-mannosidase, at 2,082,053 to 2,084,548
SMc04255
Position (kb)
2081
2082 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2080.267 kb on + strand, within SMc04253 at 2080.268 kb on - strand, within SMc04253 at 2080.290 kb on + strand, within SMc04253 at 2080.290 kb on + strand, within SMc04253 at 2080.447 kb on - strand, within SMc04253 at 2080.670 kb on + strand, within SMc04253 at 2080.670 kb on + strand, within SMc04253 at 2080.670 kb on + strand, within SMc04253 at 2080.670 kb on + strand, within SMc04253 at 2080.671 kb on - strand, within SMc04253 at 2080.674 kb on + strand, within SMc04253 at 2080.674 kb on + strand, within SMc04253 at 2080.674 kb on + strand, within SMc04253 at 2080.675 kb on - strand, within SMc04253 at 2080.675 kb on - strand, within SMc04253 at 2080.675 kb on - strand, within SMc04253 at 2080.675 kb on - strand, within SMc04253 at 2080.675 kb on - strand, within SMc04253 at 2080.675 kb on - strand, within SMc04253 at 2080.675 kb on - strand, within SMc04253 at 2080.677 kb on + strand, within SMc04253 at 2080.678 kb on - strand, within SMc04253 at 2080.678 kb on - strand, within SMc04253 at 2080.678 kb on - strand, within SMc04253 at 2080.678 kb on - strand, within SMc04253 at 2080.810 kb on + strand, within SMc04253 at 2080.812 kb on + strand, within SMc04253 at 2080.812 kb on + strand, within SMc04253 at 2080.812 kb on + strand, within SMc04253 at 2080.813 kb on - strand, within SMc04253 at 2080.813 kb on - strand, within SMc04253 at 2080.944 kb on + strand, within SMc04253 at 2080.945 kb on - strand, within SMc04253 at 2080.945 kb on - strand, within SMc04253 at 2080.945 kb on - strand, within SMc04253 at 2080.945 kb on - strand, within SMc04253 at 2081.164 kb on - strand at 2081.177 kb on - strand at 2081.225 kb on + strand at 2081.226 kb on - strand at 2081.239 kb on + strand at 2081.315 kb on - strand, within SMc04254 at 2081.459 kb on - strand, within SMc04254 at 2081.725 kb on + strand, within SMc04254 at 2081.726 kb on - strand, within SMc04254 at 2081.726 kb on - strand, within SMc04254 at 2081.729 kb on + strand, within SMc04254 at 2081.790 kb on - strand, within SMc04254 at 2081.882 kb on - strand, within SMc04254 at 2081.882 kb on - strand, within SMc04254 at 2082.085 kb on - strand at 2082.319 kb on + strand, within SMc04255 at 2082.319 kb on + strand, within SMc04255 at 2082.320 kb on - strand, within SMc04255 at 2082.320 kb on - strand at 2082.320 kb on - strand, within SMc04255 at 2082.321 kb on + strand, within SMc04255 at 2082.321 kb on + strand, within SMc04255 at 2082.321 kb on + strand, within SMc04255 at 2082.321 kb on + strand, within SMc04255 at 2082.322 kb on - strand, within SMc04255 at 2082.322 kb on - strand, within SMc04255 at 2082.322 kb on - strand, within SMc04255 at 2082.326 kb on - strand, within SMc04255 at 2082.336 kb on + strand, within SMc04255 at 2082.336 kb on + strand, within SMc04255 at 2082.336 kb on + strand, within SMc04255 at 2082.336 kb on + strand, within SMc04255 at 2082.336 kb on + strand, within SMc04255 at 2082.337 kb on - strand, within SMc04255 at 2082.337 kb on - strand, within SMc04255 at 2082.628 kb on - strand, within SMc04255 at 2082.628 kb on - strand, within SMc04255 at 2082.828 kb on + strand, within SMc04255 at 2082.954 kb on + strand, within SMc04255 at 2082.954 kb on + strand, within SMc04255 at 2082.955 kb on - strand, within SMc04255 at 2082.955 kb on - strand, within SMc04255
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol (C) remove 2,080,267 + SMc04253 0.16 +3.7 2,080,268 - SMc04253 0.16 +3.9 2,080,290 + SMc04253 0.18 +2.2 2,080,290 + SMc04253 0.18 +2.9 2,080,447 - SMc04253 0.32 +3.5 2,080,670 + SMc04253 0.52 +3.5 2,080,670 + SMc04253 0.52 +2.8 2,080,670 + SMc04253 0.52 +2.7 2,080,670 + SMc04253 0.52 +1.8 2,080,671 - SMc04253 0.52 +2.9 2,080,674 + SMc04253 0.52 +3.1 2,080,674 + SMc04253 0.52 +1.2 2,080,674 + SMc04253 0.52 +3.6 2,080,675 - SMc04253 0.52 +3.2 2,080,675 - SMc04253 0.52 +3.7 2,080,675 - SMc04253 0.52 +2.7 2,080,675 - SMc04253 0.52 +3.3 2,080,675 - SMc04253 0.52 +3.5 2,080,675 - SMc04253 0.52 +4.0 2,080,675 - SMc04253 0.52 +3.9 2,080,677 + SMc04253 0.52 +3.1 2,080,678 - SMc04253 0.52 +3.5 2,080,678 - SMc04253 0.52 +3.9 2,080,678 - SMc04253 0.52 +3.7 2,080,678 - SMc04253 0.52 +3.6 2,080,810 + SMc04253 0.64 +3.5 2,080,812 + SMc04253 0.64 +2.6 2,080,812 + SMc04253 0.64 +3.0 2,080,812 + SMc04253 0.64 +3.9 2,080,813 - SMc04253 0.64 +2.9 2,080,813 - SMc04253 0.64 +3.0 2,080,944 + SMc04253 0.76 +3.2 2,080,945 - SMc04253 0.76 +3.6 2,080,945 - SMc04253 0.76 +3.5 2,080,945 - SMc04253 0.76 +2.6 2,080,945 - SMc04253 0.76 +3.6 2,081,164 - +2.7 2,081,177 - +3.3 2,081,225 + +2.7 2,081,226 - +2.8 2,081,239 + +2.3 2,081,315 - SMc04254 0.10 +4.1 2,081,459 - SMc04254 0.29 +0.4 2,081,725 + SMc04254 0.64 +2.7 2,081,726 - SMc04254 0.64 +2.4 2,081,726 - SMc04254 0.64 +3.0 2,081,729 + SMc04254 0.65 +3.6 2,081,790 - SMc04254 0.73 +3.0 2,081,882 - SMc04254 0.85 +2.9 2,081,882 - SMc04254 0.85 +3.6 2,082,085 - -1.1 2,082,319 + SMc04255 0.11 +3.4 2,082,319 + SMc04255 0.11 +3.0 2,082,320 - SMc04255 0.11 -0.0 2,082,320 - -0.5 2,082,320 - SMc04255 0.11 -2.1 2,082,321 + SMc04255 0.11 +2.2 2,082,321 + SMc04255 0.11 +3.3 2,082,321 + SMc04255 0.11 +2.6 2,082,321 + SMc04255 0.11 +3.0 2,082,322 - SMc04255 0.11 -1.2 2,082,322 - SMc04255 0.11 -0.4 2,082,322 - SMc04255 0.11 -0.9 2,082,326 - SMc04255 0.11 -2.2 2,082,336 + SMc04255 0.11 +2.2 2,082,336 + SMc04255 0.11 +2.6 2,082,336 + SMc04255 0.11 +3.4 2,082,336 + SMc04255 0.11 +3.4 2,082,336 + SMc04255 0.11 +3.2 2,082,337 - SMc04255 0.11 -0.7 2,082,337 - SMc04255 0.11 -1.2 2,082,628 - SMc04255 0.23 +0.1 2,082,628 - SMc04255 0.23 +1.1 2,082,828 + SMc04255 0.31 +2.8 2,082,954 + SMc04255 0.36 +3.2 2,082,954 + SMc04255 0.36 +3.4 2,082,955 - SMc04255 0.36 +0.5 2,082,955 - SMc04255 0.36 +1.4
Or see this region's nucleotide sequence