Strain Fitness in Sinorhizobium meliloti 1021 around SMc04254

Experiment: Lactitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04253 and SMc04254 are separated by 16 nucleotidesSMc04254 and SMc04255 are separated by 56 nucleotides SMc04253: SMc04253 - oxidoreductase, at 2,080,085 to 2,081,218 SMc04253 SMc04254: SMc04254 - hypothetical protein, at 2,081,235 to 2,081,996 SMc04254 SMc04255: SMc04255 - beta-mannosidase, at 2,082,053 to 2,084,548 SMc04255 Position (kb) 2081 2082Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2080.267 kb on + strand, within SMc04253at 2080.268 kb on - strand, within SMc04253at 2080.290 kb on + strand, within SMc04253at 2080.290 kb on + strand, within SMc04253at 2080.447 kb on - strand, within SMc04253at 2080.670 kb on + strand, within SMc04253at 2080.670 kb on + strand, within SMc04253at 2080.670 kb on + strand, within SMc04253at 2080.670 kb on + strand, within SMc04253at 2080.671 kb on - strand, within SMc04253at 2080.674 kb on + strand, within SMc04253at 2080.674 kb on + strand, within SMc04253at 2080.674 kb on + strand, within SMc04253at 2080.675 kb on - strand, within SMc04253at 2080.675 kb on - strand, within SMc04253at 2080.675 kb on - strand, within SMc04253at 2080.675 kb on - strand, within SMc04253at 2080.675 kb on - strand, within SMc04253at 2080.675 kb on - strand, within SMc04253at 2080.675 kb on - strand, within SMc04253at 2080.677 kb on + strand, within SMc04253at 2080.678 kb on - strand, within SMc04253at 2080.678 kb on - strand, within SMc04253at 2080.678 kb on - strand, within SMc04253at 2080.678 kb on - strand, within SMc04253at 2080.810 kb on + strand, within SMc04253at 2080.812 kb on + strand, within SMc04253at 2080.812 kb on + strand, within SMc04253at 2080.812 kb on + strand, within SMc04253at 2080.813 kb on - strand, within SMc04253at 2080.813 kb on - strand, within SMc04253at 2080.944 kb on + strand, within SMc04253at 2080.945 kb on - strand, within SMc04253at 2080.945 kb on - strand, within SMc04253at 2080.945 kb on - strand, within SMc04253at 2080.945 kb on - strand, within SMc04253at 2081.164 kb on - strandat 2081.177 kb on - strandat 2081.225 kb on + strandat 2081.226 kb on - strandat 2081.239 kb on + strandat 2081.315 kb on - strand, within SMc04254at 2081.459 kb on - strand, within SMc04254at 2081.725 kb on + strand, within SMc04254at 2081.726 kb on - strand, within SMc04254at 2081.726 kb on - strand, within SMc04254at 2081.729 kb on + strand, within SMc04254at 2081.790 kb on - strand, within SMc04254at 2081.882 kb on - strand, within SMc04254at 2081.882 kb on - strand, within SMc04254at 2082.085 kb on - strandat 2082.319 kb on + strand, within SMc04255at 2082.319 kb on + strand, within SMc04255at 2082.320 kb on - strand, within SMc04255at 2082.320 kb on - strandat 2082.320 kb on - strand, within SMc04255at 2082.321 kb on + strand, within SMc04255at 2082.321 kb on + strand, within SMc04255at 2082.321 kb on + strand, within SMc04255at 2082.321 kb on + strand, within SMc04255at 2082.322 kb on - strand, within SMc04255at 2082.322 kb on - strand, within SMc04255at 2082.322 kb on - strand, within SMc04255at 2082.326 kb on - strand, within SMc04255at 2082.336 kb on + strand, within SMc04255at 2082.336 kb on + strand, within SMc04255at 2082.336 kb on + strand, within SMc04255at 2082.336 kb on + strand, within SMc04255at 2082.336 kb on + strand, within SMc04255at 2082.337 kb on - strand, within SMc04255at 2082.337 kb on - strand, within SMc04255at 2082.628 kb on - strand, within SMc04255at 2082.628 kb on - strand, within SMc04255at 2082.828 kb on + strand, within SMc04255at 2082.954 kb on + strand, within SMc04255at 2082.954 kb on + strand, within SMc04255at 2082.955 kb on - strand, within SMc04255at 2082.955 kb on - strand, within SMc04255

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol (C)
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2,080,267 + SMc04253 0.16 +3.7
2,080,268 - SMc04253 0.16 +3.9
2,080,290 + SMc04253 0.18 +2.2
2,080,290 + SMc04253 0.18 +2.9
2,080,447 - SMc04253 0.32 +3.5
2,080,670 + SMc04253 0.52 +3.5
2,080,670 + SMc04253 0.52 +2.8
2,080,670 + SMc04253 0.52 +2.7
2,080,670 + SMc04253 0.52 +1.8
2,080,671 - SMc04253 0.52 +2.9
2,080,674 + SMc04253 0.52 +3.1
2,080,674 + SMc04253 0.52 +1.2
2,080,674 + SMc04253 0.52 +3.6
2,080,675 - SMc04253 0.52 +3.2
2,080,675 - SMc04253 0.52 +3.7
2,080,675 - SMc04253 0.52 +2.7
2,080,675 - SMc04253 0.52 +3.3
2,080,675 - SMc04253 0.52 +3.5
2,080,675 - SMc04253 0.52 +4.0
2,080,675 - SMc04253 0.52 +3.9
2,080,677 + SMc04253 0.52 +3.1
2,080,678 - SMc04253 0.52 +3.5
2,080,678 - SMc04253 0.52 +3.9
2,080,678 - SMc04253 0.52 +3.7
2,080,678 - SMc04253 0.52 +3.6
2,080,810 + SMc04253 0.64 +3.5
2,080,812 + SMc04253 0.64 +2.6
2,080,812 + SMc04253 0.64 +3.0
2,080,812 + SMc04253 0.64 +3.9
2,080,813 - SMc04253 0.64 +2.9
2,080,813 - SMc04253 0.64 +3.0
2,080,944 + SMc04253 0.76 +3.2
2,080,945 - SMc04253 0.76 +3.6
2,080,945 - SMc04253 0.76 +3.5
2,080,945 - SMc04253 0.76 +2.6
2,080,945 - SMc04253 0.76 +3.6
2,081,164 - +2.7
2,081,177 - +3.3
2,081,225 + +2.7
2,081,226 - +2.8
2,081,239 + +2.3
2,081,315 - SMc04254 0.10 +4.1
2,081,459 - SMc04254 0.29 +0.4
2,081,725 + SMc04254 0.64 +2.7
2,081,726 - SMc04254 0.64 +2.4
2,081,726 - SMc04254 0.64 +3.0
2,081,729 + SMc04254 0.65 +3.6
2,081,790 - SMc04254 0.73 +3.0
2,081,882 - SMc04254 0.85 +2.9
2,081,882 - SMc04254 0.85 +3.6
2,082,085 - -1.1
2,082,319 + SMc04255 0.11 +3.4
2,082,319 + SMc04255 0.11 +3.0
2,082,320 - SMc04255 0.11 -0.0
2,082,320 - -0.5
2,082,320 - SMc04255 0.11 -2.1
2,082,321 + SMc04255 0.11 +2.2
2,082,321 + SMc04255 0.11 +3.3
2,082,321 + SMc04255 0.11 +2.6
2,082,321 + SMc04255 0.11 +3.0
2,082,322 - SMc04255 0.11 -1.2
2,082,322 - SMc04255 0.11 -0.4
2,082,322 - SMc04255 0.11 -0.9
2,082,326 - SMc04255 0.11 -2.2
2,082,336 + SMc04255 0.11 +2.2
2,082,336 + SMc04255 0.11 +2.6
2,082,336 + SMc04255 0.11 +3.4
2,082,336 + SMc04255 0.11 +3.4
2,082,336 + SMc04255 0.11 +3.2
2,082,337 - SMc04255 0.11 -0.7
2,082,337 - SMc04255 0.11 -1.2
2,082,628 - SMc04255 0.23 +0.1
2,082,628 - SMc04255 0.23 +1.1
2,082,828 + SMc04255 0.31 +2.8
2,082,954 + SMc04255 0.36 +3.2
2,082,954 + SMc04255 0.36 +3.4
2,082,955 - SMc04255 0.36 +0.5
2,082,955 - SMc04255 0.36 +1.4

Or see this region's nucleotide sequence