Experiment: Lactitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02830 and SMc02831 overlap by 1 nucleotides SMc02831 and SMc02832 are separated by 180 nucleotides
SMc02830: SMc02830 - ABC transporter permease, at 177,743 to 178,876
SMc02830
SMc02831: SMc02831 - ABC transporter permease, at 178,876 to 179,958
SMc02831
SMc02832: SMc02832 - periplasmic binding protein, at 180,139 to 181,998
SMc02832
Position (kb) 178
179
180 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 180.027 kb on - strand at 180.195 kb on - strand at 180.230 kb on + strand at 180.272 kb on + strand at 180.272 kb on + strand at 180.272 kb on + strand at 180.273 kb on - strand at 180.273 kb on - strand at 180.273 kb on - strand at 180.273 kb on - strand at 180.392 kb on + strand, within SMc02832 at 180.392 kb on + strand, within SMc02832 at 180.393 kb on - strand, within SMc02832 at 180.435 kb on - strand, within SMc02832 at 180.435 kb on - strand, within SMc02832 at 180.482 kb on + strand, within SMc02832 at 180.494 kb on + strand, within SMc02832 at 180.495 kb on - strand, within SMc02832 at 180.500 kb on + strand, within SMc02832 at 180.500 kb on + strand, within SMc02832 at 180.522 kb on - strand, within SMc02832 at 180.557 kb on - strand, within SMc02832 at 180.557 kb on - strand, within SMc02832 at 180.557 kb on - strand, within SMc02832 at 180.597 kb on + strand, within SMc02832 at 180.768 kb on - strand, within SMc02832 at 180.875 kb on + strand, within SMc02832 at 180.876 kb on - strand, within SMc02832 at 180.876 kb on - strand, within SMc02832 at 180.941 kb on + strand, within SMc02832 at 180.941 kb on + strand, within SMc02832 at 180.942 kb on - strand, within SMc02832 at 180.942 kb on - strand, within SMc02832 at 180.942 kb on - strand, within SMc02832 at 180.942 kb on - strand, within SMc02832 at 180.942 kb on - strand, within SMc02832
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol (C) remove 180,027 - -0.9 180,195 - -0.9 180,230 + -0.3 180,272 + -0.6 180,272 + -1.4 180,272 + +0.2 180,273 - +3.7 180,273 - -1.5 180,273 - +0.5 180,273 - -0.9 180,392 + SMc02832 0.14 -0.5 180,392 + SMc02832 0.14 -1.3 180,393 - SMc02832 0.14 +1.7 180,435 - SMc02832 0.16 -0.3 180,435 - SMc02832 0.16 -0.9 180,482 + SMc02832 0.18 -0.7 180,494 + SMc02832 0.19 -0.4 180,495 - SMc02832 0.19 +0.4 180,500 + SMc02832 0.19 -0.7 180,500 + SMc02832 0.19 +1.4 180,522 - SMc02832 0.21 -1.4 180,557 - SMc02832 0.22 -0.4 180,557 - SMc02832 0.22 -0.4 180,557 - SMc02832 0.22 -0.1 180,597 + SMc02832 0.25 +0.0 180,768 - SMc02832 0.34 -0.9 180,875 + SMc02832 0.40 -1.1 180,876 - SMc02832 0.40 -0.6 180,876 - SMc02832 0.40 -0.1 180,941 + SMc02832 0.43 -0.3 180,941 + SMc02832 0.43 +0.1 180,942 - SMc02832 0.43 -0.7 180,942 - SMc02832 0.43 -0.4 180,942 - SMc02832 0.43 -1.9 180,942 - SMc02832 0.43 -0.5 180,942 - SMc02832 0.43 -0.6
Or see this region's nucleotide sequence