Strain Fitness in Sinorhizobium meliloti 1021 around SMc02829

Experiment: Lactitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02828 and SMc02829 are separated by 10 nucleotidesSMc02829 and SMc02830 are separated by 8 nucleotides SMc02828: SMc02828 - hydroxyacid dehydrogenase, at 175,136 to 176,095 SMc02828 SMc02829: SMc02829 - ABC transporter ATP-binding protein, at 176,106 to 177,734 SMc02829 SMc02830: SMc02830 - ABC transporter permease, at 177,743 to 178,876 SMc02830 Position (kb) 176 177 178Strain fitness (log2 ratio) -1 0 1at 175.161 kb on - strandat 175.161 kb on - strandat 175.161 kb on - strandat 175.161 kb on - strandat 175.264 kb on - strand, within SMc02828at 175.264 kb on - strand, within SMc02828at 175.264 kb on - strand, within SMc02828at 175.264 kb on - strand, within SMc02828at 175.472 kb on - strand, within SMc02828at 175.628 kb on - strand, within SMc02828at 175.964 kb on + strand, within SMc02828at 176.107 kb on + strandat 176.107 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol (C)
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175,161 - +0.4
175,161 - +1.3
175,161 - -0.3
175,161 - -0.3
175,264 - SMc02828 0.13 +0.2
175,264 - SMc02828 0.13 -0.4
175,264 - SMc02828 0.13 +0.2
175,264 - SMc02828 0.13 -0.2
175,472 - SMc02828 0.35 +0.7
175,628 - SMc02828 0.51 +1.3
175,964 + SMc02828 0.86 +0.3
176,107 + -0.7
176,107 + -0.9

Or see this region's nucleotide sequence