Experiment: Lactitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02689 and SMc02690 are separated by 263 nucleotides SMc02690 and SMc02691 are separated by 273 nucleotides
SMc02689: SMc02689 - aldehyde dehydrogenase, at 2,537,887 to 2,539,395
SMc02689
SMc02690: SMc02690 - hypothetical protein, at 2,539,659 to 2,540,615
SMc02690
SMc02691: SMc02691 - membrane transporter, at 2,540,889 to 2,542,121
SMc02691
Position (kb)
2539
2540
2541 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2539.304 kb on + strand at 2539.352 kb on + strand at 2539.353 kb on - strand at 2539.353 kb on - strand at 2539.364 kb on + strand at 2539.364 kb on + strand at 2539.364 kb on + strand at 2539.365 kb on - strand at 2539.415 kb on - strand at 2539.415 kb on - strand at 2539.734 kb on + strand at 2539.734 kb on + strand at 2539.734 kb on + strand at 2539.735 kb on - strand at 2539.735 kb on - strand at 2539.856 kb on + strand, within SMc02690 at 2540.097 kb on + strand, within SMc02690 at 2540.098 kb on - strand, within SMc02690 at 2540.160 kb on - strand, within SMc02690 at 2540.348 kb on + strand, within SMc02690 at 2540.348 kb on + strand, within SMc02690 at 2540.581 kb on + strand at 2540.582 kb on - strand at 2540.764 kb on + strand at 2540.765 kb on - strand at 2540.778 kb on - strand at 2540.782 kb on - strand at 2540.782 kb on - strand at 2540.782 kb on - strand at 2540.782 kb on - strand at 2540.783 kb on + strand at 2540.783 kb on + strand at 2540.784 kb on - strand at 2540.784 kb on - strand at 2540.784 kb on - strand at 2540.817 kb on - strand at 2540.858 kb on - strand at 2540.893 kb on + strand at 2540.894 kb on - strand at 2540.894 kb on - strand at 2540.894 kb on - strand at 2540.894 kb on - strand at 2540.894 kb on - strand at 2540.905 kb on + strand at 2540.906 kb on - strand at 2541.442 kb on - strand, within SMc02691 at 2541.493 kb on + strand, within SMc02691 at 2541.493 kb on + strand, within SMc02691 at 2541.494 kb on - strand, within SMc02691
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol (C) remove 2,539,304 + +0.3 2,539,352 + -0.0 2,539,353 - -1.6 2,539,353 - +0.7 2,539,364 + +0.3 2,539,364 + +0.3 2,539,364 + -3.2 2,539,365 - +0.4 2,539,415 - +0.1 2,539,415 - -0.2 2,539,734 + -1.4 2,539,734 + +0.3 2,539,734 + -1.1 2,539,735 - -0.7 2,539,735 - -0.5 2,539,856 + SMc02690 0.21 -0.6 2,540,097 + SMc02690 0.46 -0.8 2,540,098 - SMc02690 0.46 -0.6 2,540,160 - SMc02690 0.52 -0.2 2,540,348 + SMc02690 0.72 -0.8 2,540,348 + SMc02690 0.72 -2.1 2,540,581 + -0.3 2,540,582 - -0.5 2,540,764 + -2.2 2,540,765 - +0.8 2,540,778 - +0.6 2,540,782 - +1.1 2,540,782 - +0.5 2,540,782 - +1.4 2,540,782 - +0.4 2,540,783 + -2.2 2,540,783 + +0.3 2,540,784 - +1.8 2,540,784 - +1.2 2,540,784 - +1.2 2,540,817 - +0.4 2,540,858 - +0.0 2,540,893 + +0.1 2,540,894 - +1.0 2,540,894 - +0.7 2,540,894 - +0.7 2,540,894 - +1.0 2,540,894 - +0.3 2,540,905 + -0.1 2,540,906 - +1.0 2,541,442 - SMc02691 0.45 +0.3 2,541,493 + SMc02691 0.49 +0.4 2,541,493 + SMc02691 0.49 -0.0 2,541,494 - SMc02691 0.49 -0.2
Or see this region's nucleotide sequence