Strain Fitness in Sinorhizobium meliloti 1021 around SMc02690

Experiment: Lactitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02689 and SMc02690 are separated by 263 nucleotidesSMc02690 and SMc02691 are separated by 273 nucleotides SMc02689: SMc02689 - aldehyde dehydrogenase, at 2,537,887 to 2,539,395 SMc02689 SMc02690: SMc02690 - hypothetical protein, at 2,539,659 to 2,540,615 SMc02690 SMc02691: SMc02691 - membrane transporter, at 2,540,889 to 2,542,121 SMc02691 Position (kb) 2539 2540 2541Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2539.304 kb on + strandat 2539.352 kb on + strandat 2539.353 kb on - strandat 2539.353 kb on - strandat 2539.364 kb on + strandat 2539.364 kb on + strandat 2539.364 kb on + strandat 2539.365 kb on - strandat 2539.415 kb on - strandat 2539.415 kb on - strandat 2539.734 kb on + strandat 2539.734 kb on + strandat 2539.734 kb on + strandat 2539.735 kb on - strandat 2539.735 kb on - strandat 2539.856 kb on + strand, within SMc02690at 2540.097 kb on + strand, within SMc02690at 2540.098 kb on - strand, within SMc02690at 2540.160 kb on - strand, within SMc02690at 2540.348 kb on + strand, within SMc02690at 2540.348 kb on + strand, within SMc02690at 2540.581 kb on + strandat 2540.582 kb on - strandat 2540.764 kb on + strandat 2540.765 kb on - strandat 2540.778 kb on - strandat 2540.782 kb on - strandat 2540.782 kb on - strandat 2540.782 kb on - strandat 2540.782 kb on - strandat 2540.783 kb on + strandat 2540.783 kb on + strandat 2540.784 kb on - strandat 2540.784 kb on - strandat 2540.784 kb on - strandat 2540.817 kb on - strandat 2540.858 kb on - strandat 2540.893 kb on + strandat 2540.894 kb on - strandat 2540.894 kb on - strandat 2540.894 kb on - strandat 2540.894 kb on - strandat 2540.894 kb on - strandat 2540.905 kb on + strandat 2540.906 kb on - strandat 2541.442 kb on - strand, within SMc02691at 2541.493 kb on + strand, within SMc02691at 2541.493 kb on + strand, within SMc02691at 2541.494 kb on - strand, within SMc02691

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol (C)
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2,539,304 + +0.3
2,539,352 + -0.0
2,539,353 - -1.6
2,539,353 - +0.7
2,539,364 + +0.3
2,539,364 + +0.3
2,539,364 + -3.2
2,539,365 - +0.4
2,539,415 - +0.1
2,539,415 - -0.2
2,539,734 + -1.4
2,539,734 + +0.3
2,539,734 + -1.1
2,539,735 - -0.7
2,539,735 - -0.5
2,539,856 + SMc02690 0.21 -0.6
2,540,097 + SMc02690 0.46 -0.8
2,540,098 - SMc02690 0.46 -0.6
2,540,160 - SMc02690 0.52 -0.2
2,540,348 + SMc02690 0.72 -0.8
2,540,348 + SMc02690 0.72 -2.1
2,540,581 + -0.3
2,540,582 - -0.5
2,540,764 + -2.2
2,540,765 - +0.8
2,540,778 - +0.6
2,540,782 - +1.1
2,540,782 - +0.5
2,540,782 - +1.4
2,540,782 - +0.4
2,540,783 + -2.2
2,540,783 + +0.3
2,540,784 - +1.8
2,540,784 - +1.2
2,540,784 - +1.2
2,540,817 - +0.4
2,540,858 - +0.0
2,540,893 + +0.1
2,540,894 - +1.0
2,540,894 - +0.7
2,540,894 - +0.7
2,540,894 - +1.0
2,540,894 - +0.3
2,540,905 + -0.1
2,540,906 - +1.0
2,541,442 - SMc02691 0.45 +0.3
2,541,493 + SMc02691 0.49 +0.4
2,541,493 + SMc02691 0.49 -0.0
2,541,494 - SMc02691 0.49 -0.2

Or see this region's nucleotide sequence