Strain Fitness in Sinorhizobium meliloti 1021 around SMc02589

Experiment: Lactitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02588 and SMc02589 overlap by 17 nucleotidesSMc02589 and SMc02676 are separated by 736 nucleotides SMc02588: SMc02588 - ABC transporter permease, at 78,132 to 79,820 SMc02588 SMc02589: SMc02589 - ABC transporter substrate-binding protein, at 79,804 to 81,030 SMc02589 SMc02676: SMc02676 - ribosomal RNA-16S, at 81,767 to 83,250 SMc02676 Position (kb) 79 80 81 82Strain fitness (log2 ratio) -1 0 1 2 3at 78.884 kb on + strand, within SMc02588at 78.884 kb on + strand, within SMc02588at 78.885 kb on - strand, within SMc02588at 78.885 kb on - strand, within SMc02588at 79.169 kb on - strand, within SMc02588at 79.207 kb on + strand, within SMc02588at 79.208 kb on - strand, within SMc02588at 79.805 kb on + strandat 79.805 kb on + strandat 79.806 kb on - strandat 79.850 kb on - strandat 79.850 kb on - strandat 79.850 kb on - strandat 80.082 kb on - strand, within SMc02589at 80.082 kb on - strand, within SMc02589at 80.380 kb on + strand, within SMc02589at 80.380 kb on + strand, within SMc02589at 80.381 kb on - strand, within SMc02589at 80.630 kb on + strand, within SMc02589at 80.630 kb on + strand, within SMc02589at 80.630 kb on + strand, within SMc02589at 80.788 kb on - strand, within SMc02589at 80.862 kb on + strand, within SMc02589at 80.862 kb on + strand, within SMc02589at 80.862 kb on + strand, within SMc02589at 80.864 kb on + strand, within SMc02589at 80.865 kb on - strand, within SMc02589at 80.904 kb on - strand, within SMc02589at 80.904 kb on - strand, within SMc02589at 81.233 kb on - strandat 81.234 kb on + strandat 81.234 kb on + strandat 81.234 kb on + strandat 81.234 kb on + strandat 81.234 kb on + strandat 81.234 kb on + strandat 81.234 kb on + strandat 81.235 kb on - strandat 81.235 kb on - strandat 81.235 kb on - strandat 81.286 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol (C)
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78,884 + SMc02588 0.45 -0.6
78,884 + SMc02588 0.45 -0.3
78,885 - SMc02588 0.45 -0.2
78,885 - SMc02588 0.45 +0.4
79,169 - SMc02588 0.61 -0.9
79,207 + SMc02588 0.64 -1.7
79,208 - SMc02588 0.64 +0.1
79,805 + -0.8
79,805 + +0.1
79,806 - +3.4
79,850 - -0.8
79,850 - +1.8
79,850 - +0.9
80,082 - SMc02589 0.23 +0.7
80,082 - SMc02589 0.23 +0.3
80,380 + SMc02589 0.47 +1.7
80,380 + SMc02589 0.47 -0.4
80,381 - SMc02589 0.47 +0.4
80,630 + SMc02589 0.67 +2.6
80,630 + SMc02589 0.67 +0.5
80,630 + SMc02589 0.67 -1.0
80,788 - SMc02589 0.80 +0.6
80,862 + SMc02589 0.86 +0.8
80,862 + SMc02589 0.86 +1.9
80,862 + SMc02589 0.86 -0.5
80,864 + SMc02589 0.86 -0.1
80,865 - SMc02589 0.86 -0.5
80,904 - SMc02589 0.90 +2.1
80,904 - SMc02589 0.90 -1.4
81,233 - +0.0
81,234 + +0.1
81,234 + -1.6
81,234 + +0.8
81,234 + +0.2
81,234 + -0.3
81,234 + +2.0
81,234 + +1.8
81,235 - -0.1
81,235 - +0.0
81,235 - -0.2
81,286 - +1.0

Or see this region's nucleotide sequence