Experiment: Lactitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02588 and SMc02589 overlap by 17 nucleotides SMc02589 and SMc02676 are separated by 736 nucleotides
SMc02588: SMc02588 - ABC transporter permease, at 78,132 to 79,820
SMc02588
SMc02589: SMc02589 - ABC transporter substrate-binding protein, at 79,804 to 81,030
SMc02589
SMc02676: SMc02676 - ribosomal RNA-16S, at 81,767 to 83,250
SMc02676
Position (kb)
79
80
81
82 Strain fitness (log2 ratio)
-1
0
1
2
3 at 78.884 kb on + strand, within SMc02588 at 78.884 kb on + strand, within SMc02588 at 78.885 kb on - strand, within SMc02588 at 78.885 kb on - strand, within SMc02588 at 79.169 kb on - strand, within SMc02588 at 79.207 kb on + strand, within SMc02588 at 79.208 kb on - strand, within SMc02588 at 79.805 kb on + strand at 79.805 kb on + strand at 79.806 kb on - strand at 79.850 kb on - strand at 79.850 kb on - strand at 79.850 kb on - strand at 80.082 kb on - strand, within SMc02589 at 80.082 kb on - strand, within SMc02589 at 80.380 kb on + strand, within SMc02589 at 80.380 kb on + strand, within SMc02589 at 80.381 kb on - strand, within SMc02589 at 80.630 kb on + strand, within SMc02589 at 80.630 kb on + strand, within SMc02589 at 80.630 kb on + strand, within SMc02589 at 80.788 kb on - strand, within SMc02589 at 80.862 kb on + strand, within SMc02589 at 80.862 kb on + strand, within SMc02589 at 80.862 kb on + strand, within SMc02589 at 80.864 kb on + strand, within SMc02589 at 80.865 kb on - strand, within SMc02589 at 80.904 kb on - strand, within SMc02589 at 80.904 kb on - strand, within SMc02589 at 81.233 kb on - strand at 81.234 kb on + strand at 81.234 kb on + strand at 81.234 kb on + strand at 81.234 kb on + strand at 81.234 kb on + strand at 81.234 kb on + strand at 81.234 kb on + strand at 81.235 kb on - strand at 81.235 kb on - strand at 81.235 kb on - strand at 81.286 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol (C) remove 78,884 + SMc02588 0.45 -0.6 78,884 + SMc02588 0.45 -0.3 78,885 - SMc02588 0.45 -0.2 78,885 - SMc02588 0.45 +0.4 79,169 - SMc02588 0.61 -0.9 79,207 + SMc02588 0.64 -1.7 79,208 - SMc02588 0.64 +0.1 79,805 + -0.8 79,805 + +0.1 79,806 - +3.4 79,850 - -0.8 79,850 - +1.8 79,850 - +0.9 80,082 - SMc02589 0.23 +0.7 80,082 - SMc02589 0.23 +0.3 80,380 + SMc02589 0.47 +1.7 80,380 + SMc02589 0.47 -0.4 80,381 - SMc02589 0.47 +0.4 80,630 + SMc02589 0.67 +2.6 80,630 + SMc02589 0.67 +0.5 80,630 + SMc02589 0.67 -1.0 80,788 - SMc02589 0.80 +0.6 80,862 + SMc02589 0.86 +0.8 80,862 + SMc02589 0.86 +1.9 80,862 + SMc02589 0.86 -0.5 80,864 + SMc02589 0.86 -0.1 80,865 - SMc02589 0.86 -0.5 80,904 - SMc02589 0.90 +2.1 80,904 - SMc02589 0.90 -1.4 81,233 - +0.0 81,234 + +0.1 81,234 + -1.6 81,234 + +0.8 81,234 + +0.2 81,234 + -0.3 81,234 + +2.0 81,234 + +1.8 81,235 - -0.1 81,235 - +0.0 81,235 - -0.2 81,286 - +1.0
Or see this region's nucleotide sequence