Strain Fitness in Sinorhizobium meliloti 1021 around SMc02478

Experiment: Lactitol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc02479 and SMc02478 are separated by 182 nucleotidesSMc02478 and SMc02477 are separated by 41 nucleotidesSMc02477 and SMc02476 are separated by 7 nucleotidesSMc02476 and SMc02475 are separated by 217 nucleotides SMc02479: SMc02479 - malate dehydrogenase, at 3,318,498 to 3,319,460 SMc02479 SMc02478: SMc02478 - hypothetical protein, at 3,319,643 to 3,320,797 SMc02478 SMc02477: SMc02477 - hypothetical protein, at 3,320,839 to 3,321,105 SMc02477 SMc02476: SMc02476 - hypothetical protein, at 3,321,113 to 3,321,391 SMc02476 SMc02475: SMc02475 - outer membrane lipoprotein, at 3,321,609 to 3,322,148 SMc02475 Position (kb) 3319 3320 3321Strain fitness (log2 ratio) -2 -1 0 1at 3319.611 kb on - strandat 3319.680 kb on + strandat 3319.680 kb on + strandat 3319.813 kb on - strand, within SMc02478at 3320.174 kb on + strand, within SMc02478at 3320.460 kb on + strand, within SMc02478at 3320.460 kb on + strand, within SMc02478at 3320.460 kb on + strand, within SMc02478at 3320.460 kb on + strand, within SMc02478at 3320.461 kb on - strand, within SMc02478at 3320.461 kb on - strand, within SMc02478at 3320.461 kb on - strand, within SMc02478at 3320.585 kb on - strand, within SMc02478at 3320.586 kb on + strand, within SMc02478at 3320.586 kb on + strand, within SMc02478at 3320.586 kb on + strand, within SMc02478at 3320.586 kb on + strand, within SMc02478at 3320.587 kb on - strand, within SMc02478at 3320.587 kb on - strand, within SMc02478at 3320.587 kb on - strand, within SMc02478at 3320.587 kb on - strand, within SMc02478at 3320.587 kb on - strand, within SMc02478at 3320.587 kb on - strand, within SMc02478at 3320.809 kb on - strandat 3320.809 kb on - strandat 3321.141 kb on + strand, within SMc02476at 3321.142 kb on - strand, within SMc02476at 3321.202 kb on - strand, within SMc02476at 3321.502 kb on + strandat 3321.518 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol (C)
remove
3,319,611 - +0.0
3,319,680 + -0.7
3,319,680 + -0.4
3,319,813 - SMc02478 0.15 -1.5
3,320,174 + SMc02478 0.46 -0.6
3,320,460 + SMc02478 0.71 -0.7
3,320,460 + SMc02478 0.71 -1.5
3,320,460 + SMc02478 0.71 -1.5
3,320,460 + SMc02478 0.71 -2.1
3,320,461 - SMc02478 0.71 -1.5
3,320,461 - SMc02478 0.71 -1.3
3,320,461 - SMc02478 0.71 -1.6
3,320,585 - SMc02478 0.82 -2.5
3,320,586 + SMc02478 0.82 -1.0
3,320,586 + SMc02478 0.82 -0.9
3,320,586 + SMc02478 0.82 -1.5
3,320,586 + SMc02478 0.82 +1.5
3,320,587 - SMc02478 0.82 -1.0
3,320,587 - SMc02478 0.82 -1.1
3,320,587 - SMc02478 0.82 -1.1
3,320,587 - SMc02478 0.82 -0.0
3,320,587 - SMc02478 0.82 +0.1
3,320,587 - SMc02478 0.82 -1.9
3,320,809 - +0.2
3,320,809 - -0.5
3,321,141 + SMc02476 0.10 +0.0
3,321,142 - SMc02476 0.10 -0.1
3,321,202 - SMc02476 0.32 -0.4
3,321,502 + -0.4
3,321,518 - +0.4

Or see this region's nucleotide sequence