Experiment: Lactitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02479 and SMc02478 are separated by 182 nucleotides SMc02478 and SMc02477 are separated by 41 nucleotides SMc02477 and SMc02476 are separated by 7 nucleotides SMc02476 and SMc02475 are separated by 217 nucleotides
SMc02479: SMc02479 - malate dehydrogenase, at 3,318,498 to 3,319,460
SMc02479
SMc02478: SMc02478 - hypothetical protein, at 3,319,643 to 3,320,797
SMc02478
SMc02477: SMc02477 - hypothetical protein, at 3,320,839 to 3,321,105
SMc02477
SMc02476: SMc02476 - hypothetical protein, at 3,321,113 to 3,321,391
SMc02476
SMc02475: SMc02475 - outer membrane lipoprotein, at 3,321,609 to 3,322,148
SMc02475
Position (kb)
3319
3320
3321 Strain fitness (log2 ratio)
-2
-1
0
1 at 3319.611 kb on - strand at 3319.680 kb on + strand at 3319.680 kb on + strand at 3319.813 kb on - strand, within SMc02478 at 3320.174 kb on + strand, within SMc02478 at 3320.460 kb on + strand, within SMc02478 at 3320.460 kb on + strand, within SMc02478 at 3320.460 kb on + strand, within SMc02478 at 3320.460 kb on + strand, within SMc02478 at 3320.461 kb on - strand, within SMc02478 at 3320.461 kb on - strand, within SMc02478 at 3320.461 kb on - strand, within SMc02478 at 3320.585 kb on - strand, within SMc02478 at 3320.586 kb on + strand, within SMc02478 at 3320.586 kb on + strand, within SMc02478 at 3320.586 kb on + strand, within SMc02478 at 3320.586 kb on + strand, within SMc02478 at 3320.587 kb on - strand, within SMc02478 at 3320.587 kb on - strand, within SMc02478 at 3320.587 kb on - strand, within SMc02478 at 3320.587 kb on - strand, within SMc02478 at 3320.587 kb on - strand, within SMc02478 at 3320.587 kb on - strand, within SMc02478 at 3320.809 kb on - strand at 3320.809 kb on - strand at 3321.141 kb on + strand, within SMc02476 at 3321.142 kb on - strand, within SMc02476 at 3321.202 kb on - strand, within SMc02476 at 3321.502 kb on + strand at 3321.518 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol (C) remove 3,319,611 - +0.0 3,319,680 + -0.7 3,319,680 + -0.4 3,319,813 - SMc02478 0.15 -1.5 3,320,174 + SMc02478 0.46 -0.6 3,320,460 + SMc02478 0.71 -0.7 3,320,460 + SMc02478 0.71 -1.5 3,320,460 + SMc02478 0.71 -1.5 3,320,460 + SMc02478 0.71 -2.1 3,320,461 - SMc02478 0.71 -1.5 3,320,461 - SMc02478 0.71 -1.3 3,320,461 - SMc02478 0.71 -1.6 3,320,585 - SMc02478 0.82 -2.5 3,320,586 + SMc02478 0.82 -1.0 3,320,586 + SMc02478 0.82 -0.9 3,320,586 + SMc02478 0.82 -1.5 3,320,586 + SMc02478 0.82 +1.5 3,320,587 - SMc02478 0.82 -1.0 3,320,587 - SMc02478 0.82 -1.1 3,320,587 - SMc02478 0.82 -1.1 3,320,587 - SMc02478 0.82 -0.0 3,320,587 - SMc02478 0.82 +0.1 3,320,587 - SMc02478 0.82 -1.9 3,320,809 - +0.2 3,320,809 - -0.5 3,321,141 + SMc02476 0.10 +0.0 3,321,142 - SMc02476 0.10 -0.1 3,321,202 - SMc02476 0.32 -0.4 3,321,502 + -0.4 3,321,518 - +0.4
Or see this region's nucleotide sequence