Strain Fitness in Sinorhizobium meliloti 1021 around SMc02232

Experiment: Lactitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02231 and SMc02232 are separated by 337 nucleotidesSMc02232 and SMc02234 overlap by 1 nucleotidesSMc02234 and SMc02235 are separated by 98 nucleotides SMc02231: SMc02231 - hypothetical protein, at 596,668 to 597,357 SMc02231 SMc02232: SMc02232 - hypothetical protein, at 597,695 to 598,621 SMc02232 SMc02234: SMc02234 - hypothetical protein, at 598,621 to 599,424 SMc02234 SMc02235: SMc02235 - transcriptional regulator, at 599,523 to 599,759 SMc02235 Position (kb) 597 598 599Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 596.702 kb on - strandat 596.702 kb on - strandat 596.702 kb on - strandat 596.752 kb on + strand, within SMc02231at 596.752 kb on + strand, within SMc02231at 596.753 kb on - strand, within SMc02231at 596.753 kb on - strand, within SMc02231at 597.211 kb on - strand, within SMc02231at 597.515 kb on + strandat 597.515 kb on + strandat 597.515 kb on + strandat 597.515 kb on + strandat 597.516 kb on - strandat 597.516 kb on - strandat 597.516 kb on - strandat 597.516 kb on - strandat 597.516 kb on - strandat 597.516 kb on - strandat 597.516 kb on - strandat 597.516 kb on - strandat 597.516 kb on - strandat 597.541 kb on + strandat 597.542 kb on - strandat 597.705 kb on - strandat 597.831 kb on - strand, within SMc02232at 597.932 kb on - strand, within SMc02232at 598.047 kb on - strand, within SMc02232at 598.054 kb on - strand, within SMc02232at 598.311 kb on - strand, within SMc02232at 598.589 kb on + strandat 598.599 kb on + strandat 598.848 kb on + strand, within SMc02234at 598.927 kb on - strand, within SMc02234at 599.138 kb on - strand, within SMc02234at 599.243 kb on - strand, within SMc02234at 599.323 kb on - strand, within SMc02234at 599.354 kb on - strandat 599.568 kb on + strand, within SMc02235at 599.568 kb on + strand, within SMc02235at 599.568 kb on + strand, within SMc02235at 599.569 kb on - strand, within SMc02235at 599.569 kb on - strand, within SMc02235at 599.569 kb on - strand, within SMc02235at 599.616 kb on + strand, within SMc02235at 599.617 kb on - strand, within SMc02235at 599.617 kb on - strand, within SMc02235

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol (C)
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596,702 - +0.8
596,702 - -0.9
596,702 - -0.0
596,752 + SMc02231 0.12 -0.7
596,752 + SMc02231 0.12 +0.8
596,753 - SMc02231 0.12 +0.1
596,753 - SMc02231 0.12 -0.8
597,211 - SMc02231 0.79 +0.8
597,515 + +0.3
597,515 + +0.3
597,515 + +0.3
597,515 + -0.2
597,516 - +0.5
597,516 - -0.6
597,516 - -0.9
597,516 - -1.7
597,516 - +0.2
597,516 - -1.0
597,516 - +0.5
597,516 - +1.5
597,516 - +0.4
597,541 + -1.1
597,542 - -0.5
597,705 - +0.5
597,831 - SMc02232 0.15 -1.2
597,932 - SMc02232 0.26 -0.7
598,047 - SMc02232 0.38 -1.4
598,054 - SMc02232 0.39 -1.4
598,311 - SMc02232 0.66 -0.4
598,589 + -2.4
598,599 + -1.2
598,848 + SMc02234 0.28 -1.0
598,927 - SMc02234 0.38 -3.0
599,138 - SMc02234 0.64 -0.7
599,243 - SMc02234 0.77 -0.6
599,323 - SMc02234 0.87 -0.9
599,354 - +1.1
599,568 + SMc02235 0.19 +0.3
599,568 + SMc02235 0.19 +2.3
599,568 + SMc02235 0.19 +0.2
599,569 - SMc02235 0.19 -0.9
599,569 - SMc02235 0.19 +0.2
599,569 - SMc02235 0.19 +0.2
599,616 + SMc02235 0.39 +0.1
599,617 - SMc02235 0.40 +0.3
599,617 - SMc02235 0.40 +0.6

Or see this region's nucleotide sequence