Experiment: Lactitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01978 and SMc01979 are separated by 4 nucleotides SMc01979 and SMc01980 are separated by 6 nucleotides
SMc01978: SMc01978 - sugar transport system permease ABC transporter protein, at 2,702,834 to 2,703,769
SMc01978
SMc01979: SMc01979 - sugar transport system permease ABC transporter protein, at 2,703,774 to 2,704,607
SMc01979
SMc01980: SMc01980 - sugar transport system ATP-binding ABC transporter protein, at 2,704,614 to 2,705,681
SMc01980
Position (kb)
2703
2704
2705 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2702.841 kb on - strand at 2702.915 kb on + strand at 2702.916 kb on - strand at 2702.916 kb on - strand at 2702.921 kb on + strand at 2702.921 kb on + strand at 2702.922 kb on - strand at 2702.922 kb on - strand at 2702.924 kb on - strand at 2703.001 kb on + strand, within SMc01978 at 2703.151 kb on - strand, within SMc01978 at 2703.380 kb on - strand, within SMc01978 at 2703.449 kb on + strand, within SMc01978 at 2703.450 kb on - strand, within SMc01978 at 2703.466 kb on - strand, within SMc01978 at 2703.635 kb on + strand, within SMc01978 at 2703.635 kb on + strand, within SMc01978 at 2703.635 kb on + strand, within SMc01978 at 2703.636 kb on - strand, within SMc01978 at 2703.636 kb on - strand, within SMc01978 at 2703.674 kb on + strand, within SMc01978 at 2703.719 kb on + strand at 2703.828 kb on + strand at 2703.828 kb on + strand at 2703.829 kb on - strand at 2703.829 kb on - strand at 2703.829 kb on - strand at 2703.829 kb on - strand at 2703.831 kb on - strand at 2703.897 kb on + strand, within SMc01979 at 2703.898 kb on - strand, within SMc01979 at 2704.087 kb on - strand, within SMc01979 at 2704.160 kb on - strand, within SMc01979 at 2704.160 kb on - strand, within SMc01979 at 2704.209 kb on + strand, within SMc01979 at 2704.209 kb on + strand, within SMc01979 at 2704.566 kb on + strand at 2704.567 kb on - strand at 2704.567 kb on - strand at 2704.567 kb on - strand at 2704.608 kb on + strand at 2704.609 kb on - strand at 2704.609 kb on - strand at 2704.650 kb on + strand at 2704.650 kb on + strand at 2704.650 kb on + strand at 2704.651 kb on - strand at 2704.864 kb on - strand, within SMc01980 at 2704.880 kb on + strand, within SMc01980 at 2704.881 kb on - strand, within SMc01980 at 2704.906 kb on - strand, within SMc01980 at 2704.906 kb on - strand, within SMc01980 at 2704.943 kb on - strand, within SMc01980 at 2705.178 kb on + strand, within SMc01980 at 2705.178 kb on + strand, within SMc01980 at 2705.179 kb on - strand, within SMc01980 at 2705.179 kb on - strand, within SMc01980 at 2705.179 kb on - strand, within SMc01980 at 2705.277 kb on + strand, within SMc01980 at 2705.278 kb on - strand, within SMc01980
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol (C) remove 2,702,841 - -2.9 2,702,915 + -1.0 2,702,916 - +0.1 2,702,916 - -0.1 2,702,921 + -0.0 2,702,921 + -0.3 2,702,922 - +0.0 2,702,922 - -1.2 2,702,924 - -1.3 2,703,001 + SMc01978 0.18 +0.2 2,703,151 - SMc01978 0.34 +0.4 2,703,380 - SMc01978 0.58 -0.2 2,703,449 + SMc01978 0.66 +0.4 2,703,450 - SMc01978 0.66 +1.4 2,703,466 - SMc01978 0.68 +0.2 2,703,635 + SMc01978 0.86 -1.2 2,703,635 + SMc01978 0.86 +1.2 2,703,635 + SMc01978 0.86 -0.0 2,703,636 - SMc01978 0.86 -0.2 2,703,636 - SMc01978 0.86 -0.2 2,703,674 + SMc01978 0.90 -1.1 2,703,719 + -1.2 2,703,828 + +0.1 2,703,828 + +0.2 2,703,829 - +0.8 2,703,829 - +2.5 2,703,829 - -0.6 2,703,829 - +0.7 2,703,831 - -0.0 2,703,897 + SMc01979 0.15 +1.0 2,703,898 - SMc01979 0.15 -0.4 2,704,087 - SMc01979 0.38 +0.6 2,704,160 - SMc01979 0.46 -1.1 2,704,160 - SMc01979 0.46 +0.2 2,704,209 + SMc01979 0.52 -0.1 2,704,209 + SMc01979 0.52 -0.5 2,704,566 + -0.9 2,704,567 - +2.0 2,704,567 - +0.6 2,704,567 - +1.1 2,704,608 + +0.3 2,704,609 - -0.3 2,704,609 - -0.6 2,704,650 + +0.0 2,704,650 + +0.0 2,704,650 + -0.2 2,704,651 - +0.1 2,704,864 - SMc01980 0.23 -0.8 2,704,880 + SMc01980 0.25 -0.5 2,704,881 - SMc01980 0.25 +0.3 2,704,906 - SMc01980 0.27 +1.0 2,704,906 - SMc01980 0.27 +0.8 2,704,943 - SMc01980 0.31 +0.3 2,705,178 + SMc01980 0.53 +0.4 2,705,178 + SMc01980 0.53 +1.1 2,705,179 - SMc01980 0.53 +1.5 2,705,179 - SMc01980 0.53 +0.2 2,705,179 - SMc01980 0.53 -0.2 2,705,277 + SMc01980 0.62 +0.5 2,705,278 - SMc01980 0.62 +0.2
Or see this region's nucleotide sequence