Strain Fitness in Sinorhizobium meliloti 1021 around SMc01979

Experiment: Lactitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01978 and SMc01979 are separated by 4 nucleotidesSMc01979 and SMc01980 are separated by 6 nucleotides SMc01978: SMc01978 - sugar transport system permease ABC transporter protein, at 2,702,834 to 2,703,769 SMc01978 SMc01979: SMc01979 - sugar transport system permease ABC transporter protein, at 2,703,774 to 2,704,607 SMc01979 SMc01980: SMc01980 - sugar transport system ATP-binding ABC transporter protein, at 2,704,614 to 2,705,681 SMc01980 Position (kb) 2703 2704 2705Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2702.841 kb on - strandat 2702.915 kb on + strandat 2702.916 kb on - strandat 2702.916 kb on - strandat 2702.921 kb on + strandat 2702.921 kb on + strandat 2702.922 kb on - strandat 2702.922 kb on - strandat 2702.924 kb on - strandat 2703.001 kb on + strand, within SMc01978at 2703.151 kb on - strand, within SMc01978at 2703.380 kb on - strand, within SMc01978at 2703.449 kb on + strand, within SMc01978at 2703.450 kb on - strand, within SMc01978at 2703.466 kb on - strand, within SMc01978at 2703.635 kb on + strand, within SMc01978at 2703.635 kb on + strand, within SMc01978at 2703.635 kb on + strand, within SMc01978at 2703.636 kb on - strand, within SMc01978at 2703.636 kb on - strand, within SMc01978at 2703.674 kb on + strand, within SMc01978at 2703.719 kb on + strandat 2703.828 kb on + strandat 2703.828 kb on + strandat 2703.829 kb on - strandat 2703.829 kb on - strandat 2703.829 kb on - strandat 2703.829 kb on - strandat 2703.831 kb on - strandat 2703.897 kb on + strand, within SMc01979at 2703.898 kb on - strand, within SMc01979at 2704.087 kb on - strand, within SMc01979at 2704.160 kb on - strand, within SMc01979at 2704.160 kb on - strand, within SMc01979at 2704.209 kb on + strand, within SMc01979at 2704.209 kb on + strand, within SMc01979at 2704.566 kb on + strandat 2704.567 kb on - strandat 2704.567 kb on - strandat 2704.567 kb on - strandat 2704.608 kb on + strandat 2704.609 kb on - strandat 2704.609 kb on - strandat 2704.650 kb on + strandat 2704.650 kb on + strandat 2704.650 kb on + strandat 2704.651 kb on - strandat 2704.864 kb on - strand, within SMc01980at 2704.880 kb on + strand, within SMc01980at 2704.881 kb on - strand, within SMc01980at 2704.906 kb on - strand, within SMc01980at 2704.906 kb on - strand, within SMc01980at 2704.943 kb on - strand, within SMc01980at 2705.178 kb on + strand, within SMc01980at 2705.178 kb on + strand, within SMc01980at 2705.179 kb on - strand, within SMc01980at 2705.179 kb on - strand, within SMc01980at 2705.179 kb on - strand, within SMc01980at 2705.277 kb on + strand, within SMc01980at 2705.278 kb on - strand, within SMc01980

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol (C)
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2,702,841 - -2.9
2,702,915 + -1.0
2,702,916 - +0.1
2,702,916 - -0.1
2,702,921 + -0.0
2,702,921 + -0.3
2,702,922 - +0.0
2,702,922 - -1.2
2,702,924 - -1.3
2,703,001 + SMc01978 0.18 +0.2
2,703,151 - SMc01978 0.34 +0.4
2,703,380 - SMc01978 0.58 -0.2
2,703,449 + SMc01978 0.66 +0.4
2,703,450 - SMc01978 0.66 +1.4
2,703,466 - SMc01978 0.68 +0.2
2,703,635 + SMc01978 0.86 -1.2
2,703,635 + SMc01978 0.86 +1.2
2,703,635 + SMc01978 0.86 -0.0
2,703,636 - SMc01978 0.86 -0.2
2,703,636 - SMc01978 0.86 -0.2
2,703,674 + SMc01978 0.90 -1.1
2,703,719 + -1.2
2,703,828 + +0.1
2,703,828 + +0.2
2,703,829 - +0.8
2,703,829 - +2.5
2,703,829 - -0.6
2,703,829 - +0.7
2,703,831 - -0.0
2,703,897 + SMc01979 0.15 +1.0
2,703,898 - SMc01979 0.15 -0.4
2,704,087 - SMc01979 0.38 +0.6
2,704,160 - SMc01979 0.46 -1.1
2,704,160 - SMc01979 0.46 +0.2
2,704,209 + SMc01979 0.52 -0.1
2,704,209 + SMc01979 0.52 -0.5
2,704,566 + -0.9
2,704,567 - +2.0
2,704,567 - +0.6
2,704,567 - +1.1
2,704,608 + +0.3
2,704,609 - -0.3
2,704,609 - -0.6
2,704,650 + +0.0
2,704,650 + +0.0
2,704,650 + -0.2
2,704,651 - +0.1
2,704,864 - SMc01980 0.23 -0.8
2,704,880 + SMc01980 0.25 -0.5
2,704,881 - SMc01980 0.25 +0.3
2,704,906 - SMc01980 0.27 +1.0
2,704,906 - SMc01980 0.27 +0.8
2,704,943 - SMc01980 0.31 +0.3
2,705,178 + SMc01980 0.53 +0.4
2,705,178 + SMc01980 0.53 +1.1
2,705,179 - SMc01980 0.53 +1.5
2,705,179 - SMc01980 0.53 +0.2
2,705,179 - SMc01980 0.53 -0.2
2,705,277 + SMc01980 0.62 +0.5
2,705,278 - SMc01980 0.62 +0.2

Or see this region's nucleotide sequence