Strain Fitness in Sinorhizobium meliloti 1021 around SMc01842

Experiment: Lactitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01843 and SMc01842 are separated by 2 nucleotidesSMc01842 and SMc04454 are separated by 390 nucleotides SMc01843: SMc01843 - 5,10-methylenetetrahydrofolate reductase, at 2,371,885 to 2,372,826 SMc01843 SMc01842: SMc01842 - methyltransferase transcription regulator protein, at 2,372,829 to 2,373,851 SMc01842 SMc04454: SMc04454 - ABC transporter ATP-binding protein, at 2,374,242 to 2,375,891 SMc04454 Position (kb) 2372 2373 2374Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2371.956 kb on - strandat 2372.065 kb on - strand, within SMc01843at 2372.184 kb on + strand, within SMc01843at 2372.184 kb on + strand, within SMc01843at 2372.197 kb on + strand, within SMc01843at 2372.198 kb on - strand, within SMc01843at 2372.249 kb on + strand, within SMc01843at 2372.286 kb on + strand, within SMc01843at 2372.332 kb on + strand, within SMc01843at 2372.332 kb on + strand, within SMc01843at 2372.332 kb on + strand, within SMc01843at 2372.333 kb on - strand, within SMc01843at 2372.333 kb on - strand, within SMc01843at 2372.333 kb on - strand, within SMc01843at 2372.333 kb on - strand, within SMc01843at 2372.445 kb on - strand, within SMc01843at 2372.465 kb on + strand, within SMc01843at 2372.675 kb on + strand, within SMc01843at 2372.675 kb on + strand, within SMc01843at 2372.676 kb on - strand, within SMc01843at 2372.676 kb on - strand, within SMc01843at 2372.768 kb on + strandat 2372.784 kb on + strandat 2372.785 kb on - strandat 2373.151 kb on + strand, within SMc01842at 2373.152 kb on - strand, within SMc01842at 2373.485 kb on - strand, within SMc01842at 2373.649 kb on + strand, within SMc01842at 2373.728 kb on + strand, within SMc01842at 2373.851 kb on + strandat 2373.878 kb on - strandat 2373.976 kb on + strandat 2373.977 kb on - strandat 2374.038 kb on + strandat 2374.205 kb on + strandat 2374.234 kb on + strandat 2374.234 kb on + strandat 2374.234 kb on + strandat 2374.235 kb on - strandat 2374.261 kb on + strandat 2374.261 kb on + strandat 2374.262 kb on - strandat 2374.262 kb on - strandat 2374.424 kb on + strand, within SMc04454at 2374.424 kb on + strand, within SMc04454at 2374.630 kb on + strand, within SMc04454at 2374.631 kb on - strand, within SMc04454

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol (C)
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2,371,956 - -0.5
2,372,065 - SMc01843 0.19 -1.7
2,372,184 + SMc01843 0.32 -3.8
2,372,184 + SMc01843 0.32 -2.4
2,372,197 + SMc01843 0.33 -1.0
2,372,198 - SMc01843 0.33 -4.1
2,372,249 + SMc01843 0.39 -2.7
2,372,286 + SMc01843 0.43 -5.8
2,372,332 + SMc01843 0.47 -2.0
2,372,332 + SMc01843 0.47 -2.8
2,372,332 + SMc01843 0.47 -3.3
2,372,333 - SMc01843 0.48 -4.7
2,372,333 - SMc01843 0.48 -2.7
2,372,333 - SMc01843 0.48 -4.0
2,372,333 - SMc01843 0.48 -4.5
2,372,445 - SMc01843 0.59 -4.8
2,372,465 + SMc01843 0.62 -4.3
2,372,675 + SMc01843 0.84 -5.2
2,372,675 + SMc01843 0.84 -6.2
2,372,676 - SMc01843 0.84 -5.2
2,372,676 - SMc01843 0.84 -3.7
2,372,768 + -5.4
2,372,784 + -1.6
2,372,785 - -3.8
2,373,151 + SMc01842 0.31 -3.4
2,373,152 - SMc01842 0.32 -1.4
2,373,485 - SMc01842 0.64 +1.4
2,373,649 + SMc01842 0.80 -1.2
2,373,728 + SMc01842 0.88 -1.0
2,373,851 + -2.6
2,373,878 - -0.4
2,373,976 + -2.9
2,373,977 - -1.3
2,374,038 + +0.3
2,374,205 + +1.1
2,374,234 + -0.4
2,374,234 + -0.5
2,374,234 + -0.3
2,374,235 - -0.3
2,374,261 + -0.8
2,374,261 + +0.7
2,374,262 - -0.3
2,374,262 - +0.9
2,374,424 + SMc04454 0.11 -1.6
2,374,424 + SMc04454 0.11 -0.3
2,374,630 + SMc04454 0.24 -0.6
2,374,631 - SMc04454 0.24 +0.1

Or see this region's nucleotide sequence