Experiment: Lactitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01843 and SMc01842 are separated by 2 nucleotides SMc01842 and SMc04454 are separated by 390 nucleotides
SMc01843: SMc01843 - 5,10-methylenetetrahydrofolate reductase, at 2,371,885 to 2,372,826
SMc01843
SMc01842: SMc01842 - methyltransferase transcription regulator protein, at 2,372,829 to 2,373,851
SMc01842
SMc04454: SMc04454 - ABC transporter ATP-binding protein, at 2,374,242 to 2,375,891
SMc04454
Position (kb)
2372
2373
2374 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 2371.956 kb on - strand at 2372.065 kb on - strand, within SMc01843 at 2372.184 kb on + strand, within SMc01843 at 2372.184 kb on + strand, within SMc01843 at 2372.197 kb on + strand, within SMc01843 at 2372.198 kb on - strand, within SMc01843 at 2372.249 kb on + strand, within SMc01843 at 2372.286 kb on + strand, within SMc01843 at 2372.332 kb on + strand, within SMc01843 at 2372.332 kb on + strand, within SMc01843 at 2372.332 kb on + strand, within SMc01843 at 2372.333 kb on - strand, within SMc01843 at 2372.333 kb on - strand, within SMc01843 at 2372.333 kb on - strand, within SMc01843 at 2372.333 kb on - strand, within SMc01843 at 2372.445 kb on - strand, within SMc01843 at 2372.465 kb on + strand, within SMc01843 at 2372.675 kb on + strand, within SMc01843 at 2372.675 kb on + strand, within SMc01843 at 2372.676 kb on - strand, within SMc01843 at 2372.676 kb on - strand, within SMc01843 at 2372.768 kb on + strand at 2372.784 kb on + strand at 2372.785 kb on - strand at 2373.151 kb on + strand, within SMc01842 at 2373.152 kb on - strand, within SMc01842 at 2373.485 kb on - strand, within SMc01842 at 2373.649 kb on + strand, within SMc01842 at 2373.728 kb on + strand, within SMc01842 at 2373.851 kb on + strand at 2373.878 kb on - strand at 2373.976 kb on + strand at 2373.977 kb on - strand at 2374.038 kb on + strand at 2374.205 kb on + strand at 2374.234 kb on + strand at 2374.234 kb on + strand at 2374.234 kb on + strand at 2374.235 kb on - strand at 2374.261 kb on + strand at 2374.261 kb on + strand at 2374.262 kb on - strand at 2374.262 kb on - strand at 2374.424 kb on + strand, within SMc04454 at 2374.424 kb on + strand, within SMc04454 at 2374.630 kb on + strand, within SMc04454 at 2374.631 kb on - strand, within SMc04454
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol (C) remove 2,371,956 - -0.5 2,372,065 - SMc01843 0.19 -1.7 2,372,184 + SMc01843 0.32 -3.8 2,372,184 + SMc01843 0.32 -2.4 2,372,197 + SMc01843 0.33 -1.0 2,372,198 - SMc01843 0.33 -4.1 2,372,249 + SMc01843 0.39 -2.7 2,372,286 + SMc01843 0.43 -5.8 2,372,332 + SMc01843 0.47 -2.0 2,372,332 + SMc01843 0.47 -2.8 2,372,332 + SMc01843 0.47 -3.3 2,372,333 - SMc01843 0.48 -4.7 2,372,333 - SMc01843 0.48 -2.7 2,372,333 - SMc01843 0.48 -4.0 2,372,333 - SMc01843 0.48 -4.5 2,372,445 - SMc01843 0.59 -4.8 2,372,465 + SMc01843 0.62 -4.3 2,372,675 + SMc01843 0.84 -5.2 2,372,675 + SMc01843 0.84 -6.2 2,372,676 - SMc01843 0.84 -5.2 2,372,676 - SMc01843 0.84 -3.7 2,372,768 + -5.4 2,372,784 + -1.6 2,372,785 - -3.8 2,373,151 + SMc01842 0.31 -3.4 2,373,152 - SMc01842 0.32 -1.4 2,373,485 - SMc01842 0.64 +1.4 2,373,649 + SMc01842 0.80 -1.2 2,373,728 + SMc01842 0.88 -1.0 2,373,851 + -2.6 2,373,878 - -0.4 2,373,976 + -2.9 2,373,977 - -1.3 2,374,038 + +0.3 2,374,205 + +1.1 2,374,234 + -0.4 2,374,234 + -0.5 2,374,234 + -0.3 2,374,235 - -0.3 2,374,261 + -0.8 2,374,261 + +0.7 2,374,262 - -0.3 2,374,262 - +0.9 2,374,424 + SMc04454 0.11 -1.6 2,374,424 + SMc04454 0.11 -0.3 2,374,630 + SMc04454 0.24 -0.6 2,374,631 - SMc04454 0.24 +0.1
Or see this region's nucleotide sequence