Strain Fitness in Sinorhizobium meliloti 1021 around SMc01532

Experiment: Lactitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01533 and SMc01532 are separated by 183 nucleotidesSMc01532 and SMc01531 are separated by 134 nucleotides SMc01533: SMc01533 - adenine deaminase, at 2,597,573 to 2,599,270 SMc01533 SMc01532: SMc01532 - alpha-glycosylase, at 2,599,454 to 2,601,097 SMc01532 SMc01531: SMc01531 - 2-dehydro-3-deoxygluconokinase, at 2,601,232 to 2,602,149 SMc01531 Position (kb) 2599 2600 2601 2602Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 2598.467 kb on + strand, within SMc01533at 2598.526 kb on - strand, within SMc01533at 2598.526 kb on - strand, within SMc01533at 2598.526 kb on - strand, within SMc01533at 2598.526 kb on - strand, within SMc01533at 2598.558 kb on + strand, within SMc01533at 2598.711 kb on - strand, within SMc01533at 2598.711 kb on - strand, within SMc01533at 2598.817 kb on - strand, within SMc01533at 2598.946 kb on + strand, within SMc01533at 2598.947 kb on - strand, within SMc01533at 2598.947 kb on - strand, within SMc01533at 2598.947 kb on - strand, within SMc01533at 2598.949 kb on + strand, within SMc01533at 2598.949 kb on + strand, within SMc01533at 2598.950 kb on - strand, within SMc01533at 2598.950 kb on - strand, within SMc01533at 2598.950 kb on - strand, within SMc01533at 2598.950 kb on - strand, within SMc01533at 2599.246 kb on - strandat 2599.246 kb on - strandat 2599.354 kb on - strandat 2599.393 kb on - strandat 2599.456 kb on - strandat 2599.728 kb on + strand, within SMc01532at 2599.729 kb on - strand, within SMc01532at 2599.974 kb on + strand, within SMc01532at 2599.974 kb on + strand, within SMc01532at 2600.194 kb on + strand, within SMc01532at 2600.195 kb on - strand, within SMc01532at 2600.195 kb on - strand, within SMc01532at 2600.197 kb on - strand, within SMc01532at 2600.203 kb on + strand, within SMc01532at 2600.203 kb on + strand, within SMc01532at 2600.203 kb on + strand, within SMc01532at 2600.203 kb on + strand, within SMc01532at 2600.203 kb on + strand, within SMc01532at 2600.204 kb on - strand, within SMc01532at 2600.204 kb on - strand, within SMc01532at 2600.204 kb on - strand, within SMc01532at 2600.204 kb on - strand, within SMc01532at 2600.204 kb on - strand, within SMc01532at 2600.204 kb on - strand, within SMc01532at 2600.229 kb on + strand, within SMc01532at 2600.295 kb on + strand, within SMc01532at 2600.295 kb on + strand, within SMc01532at 2600.296 kb on - strand, within SMc01532at 2600.296 kb on - strand, within SMc01532at 2600.358 kb on + strand, within SMc01532at 2600.358 kb on + strand, within SMc01532at 2600.360 kb on + strand, within SMc01532at 2600.360 kb on + strand, within SMc01532at 2600.360 kb on + strand, within SMc01532at 2600.360 kb on + strand, within SMc01532at 2600.361 kb on - strand, within SMc01532at 2600.361 kb on - strand, within SMc01532at 2600.361 kb on - strandat 2600.361 kb on - strand, within SMc01532at 2600.361 kb on - strand, within SMc01532at 2600.466 kb on + strand, within SMc01532at 2600.602 kb on - strand, within SMc01532at 2600.602 kb on - strand, within SMc01532at 2600.602 kb on - strand, within SMc01532at 2600.602 kb on - strand, within SMc01532at 2600.602 kb on - strand, within SMc01532at 2600.703 kb on + strand, within SMc01532at 2600.703 kb on + strand, within SMc01532at 2600.703 kb on + strand, within SMc01532at 2600.704 kb on - strand, within SMc01532at 2600.771 kb on - strand, within SMc01532at 2601.036 kb on + strandat 2601.036 kb on + strandat 2601.037 kb on - strandat 2601.037 kb on - strandat 2601.045 kb on + strandat 2601.135 kb on + strandat 2601.310 kb on + strandat 2601.311 kb on - strandat 2601.340 kb on + strand, within SMc01531at 2601.379 kb on + strand, within SMc01531at 2601.494 kb on - strand, within SMc01531at 2601.494 kb on - strand, within SMc01531at 2601.494 kb on - strand, within SMc01531at 2601.495 kb on + strand, within SMc01531at 2601.496 kb on - strand, within SMc01531at 2601.496 kb on - strand, within SMc01531at 2601.496 kb on - strand, within SMc01531at 2602.084 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol (C)
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2,598,467 + SMc01533 0.53 -0.3
2,598,526 - SMc01533 0.56 -0.2
2,598,526 - SMc01533 0.56 -0.1
2,598,526 - SMc01533 0.56 -0.1
2,598,526 - SMc01533 0.56 +1.0
2,598,558 + SMc01533 0.58 -0.3
2,598,711 - SMc01533 0.67 +0.1
2,598,711 - SMc01533 0.67 -0.5
2,598,817 - SMc01533 0.73 -0.2
2,598,946 + SMc01533 0.81 -0.0
2,598,947 - SMc01533 0.81 +0.4
2,598,947 - SMc01533 0.81 +0.9
2,598,947 - SMc01533 0.81 +1.0
2,598,949 + SMc01533 0.81 -0.8
2,598,949 + SMc01533 0.81 +0.4
2,598,950 - SMc01533 0.81 +2.5
2,598,950 - SMc01533 0.81 +0.0
2,598,950 - SMc01533 0.81 +0.6
2,598,950 - SMc01533 0.81 +0.6
2,599,246 - +0.2
2,599,246 - -6.6
2,599,354 - -0.1
2,599,393 - +0.1
2,599,456 - +0.1
2,599,728 + SMc01532 0.17 -0.8
2,599,729 - SMc01532 0.17 -0.2
2,599,974 + SMc01532 0.32 +0.1
2,599,974 + SMc01532 0.32 +0.5
2,600,194 + SMc01532 0.45 -0.2
2,600,195 - SMc01532 0.45 -1.7
2,600,195 - SMc01532 0.45 +0.4
2,600,197 - SMc01532 0.45 -0.6
2,600,203 + SMc01532 0.46 -0.6
2,600,203 + SMc01532 0.46 +0.4
2,600,203 + SMc01532 0.46 -0.2
2,600,203 + SMc01532 0.46 -0.2
2,600,203 + SMc01532 0.46 -0.4
2,600,204 - SMc01532 0.46 -0.8
2,600,204 - SMc01532 0.46 +1.0
2,600,204 - SMc01532 0.46 -0.8
2,600,204 - SMc01532 0.46 -0.7
2,600,204 - SMc01532 0.46 -0.6
2,600,204 - SMc01532 0.46 -0.3
2,600,229 + SMc01532 0.47 +1.1
2,600,295 + SMc01532 0.51 -1.3
2,600,295 + SMc01532 0.51 +1.0
2,600,296 - SMc01532 0.51 -0.5
2,600,296 - SMc01532 0.51 +0.2
2,600,358 + SMc01532 0.55 -0.0
2,600,358 + SMc01532 0.55 -0.0
2,600,360 + SMc01532 0.55 -0.9
2,600,360 + SMc01532 0.55 -2.5
2,600,360 + SMc01532 0.55 -0.2
2,600,360 + SMc01532 0.55 +0.2
2,600,361 - SMc01532 0.55 +0.4
2,600,361 - SMc01532 0.55 -0.9
2,600,361 - +1.2
2,600,361 - SMc01532 0.55 -0.0
2,600,361 - SMc01532 0.55 -0.6
2,600,466 + SMc01532 0.62 +2.6
2,600,602 - SMc01532 0.70 +1.0
2,600,602 - SMc01532 0.70 -0.8
2,600,602 - SMc01532 0.70 +1.0
2,600,602 - SMc01532 0.70 -0.4
2,600,602 - SMc01532 0.70 +0.3
2,600,703 + SMc01532 0.76 -2.3
2,600,703 + SMc01532 0.76 -1.5
2,600,703 + SMc01532 0.76 +0.3
2,600,704 - SMc01532 0.76 +0.4
2,600,771 - SMc01532 0.80 -0.6
2,601,036 + +0.0
2,601,036 + -0.4
2,601,037 - +1.3
2,601,037 - +0.4
2,601,045 + -0.8
2,601,135 + +0.9
2,601,310 + -0.3
2,601,311 - -0.1
2,601,340 + SMc01531 0.12 +0.9
2,601,379 + SMc01531 0.16 +0.1
2,601,494 - SMc01531 0.29 -0.7
2,601,494 - SMc01531 0.29 +0.2
2,601,494 - SMc01531 0.29 +0.4
2,601,495 + SMc01531 0.29 +1.6
2,601,496 - SMc01531 0.29 +1.2
2,601,496 - SMc01531 0.29 -0.8
2,601,496 - SMc01531 0.29 -0.6
2,602,084 - +0.2

Or see this region's nucleotide sequence