Experiment: Lactitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01533 and SMc01532 are separated by 183 nucleotides SMc01532 and SMc01531 are separated by 134 nucleotides
SMc01533: SMc01533 - adenine deaminase, at 2,597,573 to 2,599,270
SMc01533
SMc01532: SMc01532 - alpha-glycosylase, at 2,599,454 to 2,601,097
SMc01532
SMc01531: SMc01531 - 2-dehydro-3-deoxygluconokinase, at 2,601,232 to 2,602,149
SMc01531
Position (kb)
2599
2600
2601
2602 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2 at 2598.467 kb on + strand, within SMc01533 at 2598.526 kb on - strand, within SMc01533 at 2598.526 kb on - strand, within SMc01533 at 2598.526 kb on - strand, within SMc01533 at 2598.526 kb on - strand, within SMc01533 at 2598.558 kb on + strand, within SMc01533 at 2598.711 kb on - strand, within SMc01533 at 2598.711 kb on - strand, within SMc01533 at 2598.817 kb on - strand, within SMc01533 at 2598.946 kb on + strand, within SMc01533 at 2598.947 kb on - strand, within SMc01533 at 2598.947 kb on - strand, within SMc01533 at 2598.947 kb on - strand, within SMc01533 at 2598.949 kb on + strand, within SMc01533 at 2598.949 kb on + strand, within SMc01533 at 2598.950 kb on - strand, within SMc01533 at 2598.950 kb on - strand, within SMc01533 at 2598.950 kb on - strand, within SMc01533 at 2598.950 kb on - strand, within SMc01533 at 2599.246 kb on - strand at 2599.246 kb on - strand at 2599.354 kb on - strand at 2599.393 kb on - strand at 2599.456 kb on - strand at 2599.728 kb on + strand, within SMc01532 at 2599.729 kb on - strand, within SMc01532 at 2599.974 kb on + strand, within SMc01532 at 2599.974 kb on + strand, within SMc01532 at 2600.194 kb on + strand, within SMc01532 at 2600.195 kb on - strand, within SMc01532 at 2600.195 kb on - strand, within SMc01532 at 2600.197 kb on - strand, within SMc01532 at 2600.203 kb on + strand, within SMc01532 at 2600.203 kb on + strand, within SMc01532 at 2600.203 kb on + strand, within SMc01532 at 2600.203 kb on + strand, within SMc01532 at 2600.203 kb on + strand, within SMc01532 at 2600.204 kb on - strand, within SMc01532 at 2600.204 kb on - strand, within SMc01532 at 2600.204 kb on - strand, within SMc01532 at 2600.204 kb on - strand, within SMc01532 at 2600.204 kb on - strand, within SMc01532 at 2600.204 kb on - strand, within SMc01532 at 2600.229 kb on + strand, within SMc01532 at 2600.295 kb on + strand, within SMc01532 at 2600.295 kb on + strand, within SMc01532 at 2600.296 kb on - strand, within SMc01532 at 2600.296 kb on - strand, within SMc01532 at 2600.358 kb on + strand, within SMc01532 at 2600.358 kb on + strand, within SMc01532 at 2600.360 kb on + strand, within SMc01532 at 2600.360 kb on + strand, within SMc01532 at 2600.360 kb on + strand, within SMc01532 at 2600.360 kb on + strand, within SMc01532 at 2600.361 kb on - strand, within SMc01532 at 2600.361 kb on - strand, within SMc01532 at 2600.361 kb on - strand at 2600.361 kb on - strand, within SMc01532 at 2600.361 kb on - strand, within SMc01532 at 2600.466 kb on + strand, within SMc01532 at 2600.602 kb on - strand, within SMc01532 at 2600.602 kb on - strand, within SMc01532 at 2600.602 kb on - strand, within SMc01532 at 2600.602 kb on - strand, within SMc01532 at 2600.602 kb on - strand, within SMc01532 at 2600.703 kb on + strand, within SMc01532 at 2600.703 kb on + strand, within SMc01532 at 2600.703 kb on + strand, within SMc01532 at 2600.704 kb on - strand, within SMc01532 at 2600.771 kb on - strand, within SMc01532 at 2601.036 kb on + strand at 2601.036 kb on + strand at 2601.037 kb on - strand at 2601.037 kb on - strand at 2601.045 kb on + strand at 2601.135 kb on + strand at 2601.310 kb on + strand at 2601.311 kb on - strand at 2601.340 kb on + strand, within SMc01531 at 2601.379 kb on + strand, within SMc01531 at 2601.494 kb on - strand, within SMc01531 at 2601.494 kb on - strand, within SMc01531 at 2601.494 kb on - strand, within SMc01531 at 2601.495 kb on + strand, within SMc01531 at 2601.496 kb on - strand, within SMc01531 at 2601.496 kb on - strand, within SMc01531 at 2601.496 kb on - strand, within SMc01531 at 2602.084 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol (C) remove 2,598,467 + SMc01533 0.53 -0.3 2,598,526 - SMc01533 0.56 -0.2 2,598,526 - SMc01533 0.56 -0.1 2,598,526 - SMc01533 0.56 -0.1 2,598,526 - SMc01533 0.56 +1.0 2,598,558 + SMc01533 0.58 -0.3 2,598,711 - SMc01533 0.67 +0.1 2,598,711 - SMc01533 0.67 -0.5 2,598,817 - SMc01533 0.73 -0.2 2,598,946 + SMc01533 0.81 -0.0 2,598,947 - SMc01533 0.81 +0.4 2,598,947 - SMc01533 0.81 +0.9 2,598,947 - SMc01533 0.81 +1.0 2,598,949 + SMc01533 0.81 -0.8 2,598,949 + SMc01533 0.81 +0.4 2,598,950 - SMc01533 0.81 +2.5 2,598,950 - SMc01533 0.81 +0.0 2,598,950 - SMc01533 0.81 +0.6 2,598,950 - SMc01533 0.81 +0.6 2,599,246 - +0.2 2,599,246 - -6.6 2,599,354 - -0.1 2,599,393 - +0.1 2,599,456 - +0.1 2,599,728 + SMc01532 0.17 -0.8 2,599,729 - SMc01532 0.17 -0.2 2,599,974 + SMc01532 0.32 +0.1 2,599,974 + SMc01532 0.32 +0.5 2,600,194 + SMc01532 0.45 -0.2 2,600,195 - SMc01532 0.45 -1.7 2,600,195 - SMc01532 0.45 +0.4 2,600,197 - SMc01532 0.45 -0.6 2,600,203 + SMc01532 0.46 -0.6 2,600,203 + SMc01532 0.46 +0.4 2,600,203 + SMc01532 0.46 -0.2 2,600,203 + SMc01532 0.46 -0.2 2,600,203 + SMc01532 0.46 -0.4 2,600,204 - SMc01532 0.46 -0.8 2,600,204 - SMc01532 0.46 +1.0 2,600,204 - SMc01532 0.46 -0.8 2,600,204 - SMc01532 0.46 -0.7 2,600,204 - SMc01532 0.46 -0.6 2,600,204 - SMc01532 0.46 -0.3 2,600,229 + SMc01532 0.47 +1.1 2,600,295 + SMc01532 0.51 -1.3 2,600,295 + SMc01532 0.51 +1.0 2,600,296 - SMc01532 0.51 -0.5 2,600,296 - SMc01532 0.51 +0.2 2,600,358 + SMc01532 0.55 -0.0 2,600,358 + SMc01532 0.55 -0.0 2,600,360 + SMc01532 0.55 -0.9 2,600,360 + SMc01532 0.55 -2.5 2,600,360 + SMc01532 0.55 -0.2 2,600,360 + SMc01532 0.55 +0.2 2,600,361 - SMc01532 0.55 +0.4 2,600,361 - SMc01532 0.55 -0.9 2,600,361 - +1.2 2,600,361 - SMc01532 0.55 -0.0 2,600,361 - SMc01532 0.55 -0.6 2,600,466 + SMc01532 0.62 +2.6 2,600,602 - SMc01532 0.70 +1.0 2,600,602 - SMc01532 0.70 -0.8 2,600,602 - SMc01532 0.70 +1.0 2,600,602 - SMc01532 0.70 -0.4 2,600,602 - SMc01532 0.70 +0.3 2,600,703 + SMc01532 0.76 -2.3 2,600,703 + SMc01532 0.76 -1.5 2,600,703 + SMc01532 0.76 +0.3 2,600,704 - SMc01532 0.76 +0.4 2,600,771 - SMc01532 0.80 -0.6 2,601,036 + +0.0 2,601,036 + -0.4 2,601,037 - +1.3 2,601,037 - +0.4 2,601,045 + -0.8 2,601,135 + +0.9 2,601,310 + -0.3 2,601,311 - -0.1 2,601,340 + SMc01531 0.12 +0.9 2,601,379 + SMc01531 0.16 +0.1 2,601,494 - SMc01531 0.29 -0.7 2,601,494 - SMc01531 0.29 +0.2 2,601,494 - SMc01531 0.29 +0.4 2,601,495 + SMc01531 0.29 +1.6 2,601,496 - SMc01531 0.29 +1.2 2,601,496 - SMc01531 0.29 -0.8 2,601,496 - SMc01531 0.29 -0.6 2,602,084 - +0.2
Or see this region's nucleotide sequence