Strain Fitness in Sinorhizobium meliloti 1021 around SMc01174

Experiment: Lactitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01175 and SMc01174 are separated by 269 nucleotidesSMc01174 and SMc01173 are separated by 7 nucleotidesSMc01173 and SMc01172 are separated by 197 nucleotides SMc01175: SMc01175 - oxidoreductase, at 1,754,542 to 1,755,390 SMc01175 SMc01174: SMc01174 - cysteine synthase A, at 1,755,660 to 1,756,745 SMc01174 SMc01173: SMc01173 - hypothetical protein, at 1,756,753 to 1,757,502 SMc01173 SMc01172: SMc01172 - thiosulfate sulfurtransferase, at 1,757,700 to 1,758,563 SMc01172 Position (kb) 1755 1756 1757Strain fitness (log2 ratio) -2 -1 0 1 2at 1754.664 kb on + strand, within SMc01175at 1754.664 kb on + strand, within SMc01175at 1754.664 kb on + strand, within SMc01175at 1754.684 kb on + strand, within SMc01175at 1754.685 kb on - strand, within SMc01175at 1754.688 kb on + strand, within SMc01175at 1754.688 kb on + strand, within SMc01175at 1754.812 kb on - strand, within SMc01175at 1754.812 kb on - strand, within SMc01175at 1754.916 kb on - strand, within SMc01175at 1754.943 kb on - strand, within SMc01175at 1754.994 kb on + strand, within SMc01175at 1754.995 kb on - strand, within SMc01175at 1754.995 kb on - strand, within SMc01175at 1755.143 kb on + strand, within SMc01175at 1755.244 kb on + strand, within SMc01175at 1755.244 kb on + strand, within SMc01175at 1755.244 kb on + strand, within SMc01175at 1755.245 kb on - strand, within SMc01175at 1755.245 kb on - strand, within SMc01175at 1755.379 kb on + strandat 1755.380 kb on - strandat 1755.380 kb on - strandat 1755.380 kb on - strandat 1755.435 kb on + strandat 1755.436 kb on - strandat 1755.450 kb on + strandat 1755.450 kb on + strandat 1755.450 kb on + strandat 1755.450 kb on + strandat 1755.450 kb on + strandat 1755.450 kb on + strandat 1755.451 kb on - strandat 1755.451 kb on - strandat 1755.452 kb on + strandat 1755.452 kb on + strandat 1755.453 kb on - strandat 1755.453 kb on - strandat 1755.554 kb on + strandat 1755.555 kb on - strandat 1755.555 kb on - strandat 1755.567 kb on + strandat 1755.596 kb on + strandat 1755.654 kb on + strandat 1755.655 kb on - strandat 1755.666 kb on - strandat 1755.704 kb on + strandat 1755.705 kb on - strandat 1755.705 kb on - strandat 1755.705 kb on - strandat 1755.915 kb on - strand, within SMc01174at 1755.967 kb on - strand, within SMc01174at 1756.066 kb on - strand, within SMc01174at 1756.083 kb on + strand, within SMc01174at 1756.083 kb on + strand, within SMc01174at 1756.083 kb on + strand, within SMc01174at 1756.084 kb on - strand, within SMc01174at 1756.084 kb on - strand, within SMc01174at 1756.084 kb on - strand, within SMc01174at 1756.084 kb on - strand, within SMc01174at 1756.353 kb on + strand, within SMc01174at 1756.353 kb on + strand, within SMc01174at 1756.354 kb on - strand, within SMc01174at 1756.494 kb on + strand, within SMc01174at 1756.494 kb on + strand, within SMc01174at 1756.494 kb on + strand, within SMc01174at 1756.495 kb on - strand, within SMc01174at 1756.524 kb on - strand, within SMc01174at 1756.524 kb on - strand, within SMc01174at 1756.623 kb on + strand, within SMc01174at 1756.623 kb on + strand, within SMc01174at 1756.624 kb on - strand, within SMc01174at 1756.636 kb on - strand, within SMc01174at 1756.717 kb on + strandat 1756.717 kb on + strandat 1756.718 kb on - strandat 1756.718 kb on - strandat 1756.728 kb on + strandat 1756.744 kb on - strandat 1756.744 kb on - strandat 1756.868 kb on - strand, within SMc01173at 1757.054 kb on - strand, within SMc01173at 1757.234 kb on - strand, within SMc01173at 1757.464 kb on - strandat 1757.465 kb on + strandat 1757.596 kb on - strandat 1757.672 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol (C)
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1,754,664 + SMc01175 0.14 +0.3
1,754,664 + SMc01175 0.14 -0.2
1,754,664 + SMc01175 0.14 +2.2
1,754,684 + SMc01175 0.17 -1.3
1,754,685 - SMc01175 0.17 -0.1
1,754,688 + SMc01175 0.17 +0.1
1,754,688 + SMc01175 0.17 -0.4
1,754,812 - SMc01175 0.32 -0.2
1,754,812 - SMc01175 0.32 +0.8
1,754,916 - SMc01175 0.44 -0.1
1,754,943 - SMc01175 0.47 +0.8
1,754,994 + SMc01175 0.53 -0.9
1,754,995 - SMc01175 0.53 +0.2
1,754,995 - SMc01175 0.53 -0.1
1,755,143 + SMc01175 0.71 +0.5
1,755,244 + SMc01175 0.83 +0.4
1,755,244 + SMc01175 0.83 -0.5
1,755,244 + SMc01175 0.83 -1.3
1,755,245 - SMc01175 0.83 -0.6
1,755,245 - SMc01175 0.83 +0.2
1,755,379 + -0.1
1,755,380 - -0.3
1,755,380 - -0.8
1,755,380 - -0.1
1,755,435 + +0.1
1,755,436 - -0.2
1,755,450 + +0.4
1,755,450 + -0.4
1,755,450 + -0.5
1,755,450 + -0.1
1,755,450 + -1.1
1,755,450 + +0.5
1,755,451 - -0.2
1,755,451 - -1.3
1,755,452 + -0.1
1,755,452 + -0.6
1,755,453 - +1.6
1,755,453 - -0.4
1,755,554 + -0.7
1,755,555 - -0.6
1,755,555 - +0.7
1,755,567 + +1.6
1,755,596 + +1.7
1,755,654 + +0.2
1,755,655 - -0.4
1,755,666 - -0.2
1,755,704 + -1.4
1,755,705 - -2.1
1,755,705 - +0.1
1,755,705 - -1.6
1,755,915 - SMc01174 0.23 -0.2
1,755,967 - SMc01174 0.28 -0.4
1,756,066 - SMc01174 0.37 -2.0
1,756,083 + SMc01174 0.39 -0.9
1,756,083 + SMc01174 0.39 -0.9
1,756,083 + SMc01174 0.39 -0.8
1,756,084 - SMc01174 0.39 +0.4
1,756,084 - SMc01174 0.39 -0.0
1,756,084 - SMc01174 0.39 -1.2
1,756,084 - SMc01174 0.39 -1.2
1,756,353 + SMc01174 0.64 -0.4
1,756,353 + SMc01174 0.64 -1.0
1,756,354 - SMc01174 0.64 -1.2
1,756,494 + SMc01174 0.77 +1.4
1,756,494 + SMc01174 0.77 -2.0
1,756,494 + SMc01174 0.77 -1.8
1,756,495 - SMc01174 0.77 -0.4
1,756,524 - SMc01174 0.80 -2.1
1,756,524 - SMc01174 0.80 -0.9
1,756,623 + SMc01174 0.89 +0.1
1,756,623 + SMc01174 0.89 -1.1
1,756,624 - SMc01174 0.89 -0.2
1,756,636 - SMc01174 0.90 -0.7
1,756,717 + -0.1
1,756,717 + +0.7
1,756,718 - +0.3
1,756,718 - -1.2
1,756,728 + -0.5
1,756,744 - +0.3
1,756,744 - +0.4
1,756,868 - SMc01173 0.15 -0.2
1,757,054 - SMc01173 0.40 +0.0
1,757,234 - SMc01173 0.64 +0.1
1,757,464 - -0.2
1,757,465 + -0.2
1,757,596 - -0.1
1,757,672 - +0.8

Or see this region's nucleotide sequence