Strain Fitness in Sinorhizobium meliloti 1021 around SMc00709

Experiment: Lactitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00710 and SMc00709 are separated by 124 nucleotidesSMc00709 and SMc00708 are separated by 101 nucleotidesSMc00708 and SMc00707 are separated by 1 nucleotides SMc00710: SMc00710 - histidinol-phosphate aminotransferase, at 2,869,894 to 2,871,000 SMc00710 SMc00709: SMc00709 - hypothetical protein, at 2,871,125 to 2,871,889 SMc00709 SMc00708: SMc00708 - hydroxyacylglutathione hydrolase (glyoxalase II) (GLX II) protein, at 2,871,991 to 2,872,761 SMc00708 SMc00707: SMc00707 - hypothetical protein, at 2,872,763 to 2,873,203 SMc00707 Position (kb) 2871 2872Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2870.291 kb on + strand, within SMc00710at 2870.292 kb on - strand, within SMc00710at 2870.292 kb on - strand, within SMc00710at 2870.324 kb on + strand, within SMc00710at 2870.324 kb on + strand, within SMc00710at 2870.324 kb on + strand, within SMc00710at 2870.325 kb on - strand, within SMc00710at 2870.325 kb on - strand, within SMc00710at 2870.393 kb on + strand, within SMc00710at 2870.393 kb on + strand, within SMc00710at 2870.393 kb on + strand, within SMc00710at 2870.393 kb on + strand, within SMc00710at 2870.412 kb on - strand, within SMc00710at 2870.412 kb on - strand, within SMc00710at 2870.412 kb on - strand, within SMc00710at 2870.493 kb on + strand, within SMc00710at 2870.493 kb on + strand, within SMc00710at 2870.495 kb on + strand, within SMc00710at 2870.495 kb on + strand, within SMc00710at 2870.495 kb on + strandat 2870.495 kb on + strand, within SMc00710at 2870.495 kb on + strand, within SMc00710at 2870.495 kb on + strand, within SMc00710at 2870.496 kb on - strand, within SMc00710at 2870.496 kb on - strand, within SMc00710at 2870.496 kb on - strand, within SMc00710at 2870.496 kb on - strand, within SMc00710at 2870.496 kb on - strand, within SMc00710at 2870.496 kb on - strand, within SMc00710at 2870.496 kb on - strand, within SMc00710at 2870.496 kb on - strand, within SMc00710at 2870.496 kb on - strand, within SMc00710at 2870.496 kb on - strand, within SMc00710at 2870.496 kb on - strand, within SMc00710at 2870.496 kb on - strand, within SMc00710at 2870.496 kb on - strand, within SMc00710at 2870.496 kb on - strand, within SMc00710at 2870.564 kb on - strand, within SMc00710at 2870.693 kb on + strand, within SMc00710at 2870.694 kb on - strand, within SMc00710at 2870.694 kb on - strand, within SMc00710at 2870.697 kb on + strand, within SMc00710at 2870.697 kb on + strand, within SMc00710at 2870.697 kb on + strand, within SMc00710at 2870.697 kb on + strand, within SMc00710at 2870.698 kb on - strand, within SMc00710at 2870.698 kb on - strand, within SMc00710at 2870.942 kb on + strandat 2870.943 kb on - strandat 2870.943 kb on - strandat 2871.053 kb on + strandat 2871.054 kb on - strandat 2871.054 kb on - strandat 2871.054 kb on - strandat 2871.126 kb on + strandat 2871.126 kb on + strandat 2871.584 kb on + strand, within SMc00709at 2871.585 kb on - strand, within SMc00709at 2871.585 kb on - strand, within SMc00709at 2871.585 kb on - strand, within SMc00709at 2871.595 kb on + strand, within SMc00709at 2871.846 kb on + strandat 2871.846 kb on + strandat 2871.847 kb on - strandat 2871.892 kb on + strandat 2871.893 kb on - strandat 2871.906 kb on + strandat 2871.928 kb on + strandat 2871.929 kb on - strandat 2872.037 kb on - strandat 2872.037 kb on - strandat 2872.037 kb on - strandat 2872.037 kb on - strandat 2872.037 kb on - strandat 2872.062 kb on + strandat 2872.063 kb on - strandat 2872.259 kb on + strand, within SMc00708at 2872.260 kb on - strand, within SMc00708at 2872.510 kb on + strand, within SMc00708at 2872.510 kb on + strand, within SMc00708at 2872.510 kb on + strand, within SMc00708at 2872.510 kb on + strand, within SMc00708at 2872.510 kb on + strand, within SMc00708at 2872.510 kb on + strand, within SMc00708at 2872.510 kb on + strand, within SMc00708at 2872.511 kb on - strand, within SMc00708at 2872.511 kb on - strand, within SMc00708at 2872.511 kb on - strand, within SMc00708at 2872.511 kb on - strand, within SMc00708at 2872.736 kb on + strandat 2872.793 kb on - strandat 2872.793 kb on - strandat 2872.793 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol (C)
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2,870,291 + SMc00710 0.36 -1.1
2,870,292 - SMc00710 0.36 -0.3
2,870,292 - SMc00710 0.36 -0.1
2,870,324 + SMc00710 0.39 +0.5
2,870,324 + SMc00710 0.39 -4.0
2,870,324 + SMc00710 0.39 -3.8
2,870,325 - SMc00710 0.39 -0.3
2,870,325 - SMc00710 0.39 -0.1
2,870,393 + SMc00710 0.45 -0.9
2,870,393 + SMc00710 0.45 -0.9
2,870,393 + SMc00710 0.45 -3.1
2,870,393 + SMc00710 0.45 -1.3
2,870,412 - SMc00710 0.47 -1.2
2,870,412 - SMc00710 0.47 -0.4
2,870,412 - SMc00710 0.47 +0.2
2,870,493 + SMc00710 0.54 -1.8
2,870,493 + SMc00710 0.54 -1.7
2,870,495 + SMc00710 0.54 -2.5
2,870,495 + SMc00710 0.54 -1.2
2,870,495 + +1.3
2,870,495 + SMc00710 0.54 -1.8
2,870,495 + SMc00710 0.54 -1.7
2,870,495 + SMc00710 0.54 -4.1
2,870,496 - SMc00710 0.54 -0.3
2,870,496 - SMc00710 0.54 -0.7
2,870,496 - SMc00710 0.54 -0.2
2,870,496 - SMc00710 0.54 +1.0
2,870,496 - SMc00710 0.54 -0.1
2,870,496 - SMc00710 0.54 -0.3
2,870,496 - SMc00710 0.54 -1.4
2,870,496 - SMc00710 0.54 +0.1
2,870,496 - SMc00710 0.54 +0.5
2,870,496 - SMc00710 0.54 +0.6
2,870,496 - SMc00710 0.54 -0.1
2,870,496 - SMc00710 0.54 -0.1
2,870,496 - SMc00710 0.54 +0.1
2,870,496 - SMc00710 0.54 -0.7
2,870,564 - SMc00710 0.61 -1.7
2,870,693 + SMc00710 0.72 +0.3
2,870,694 - SMc00710 0.72 +1.0
2,870,694 - SMc00710 0.72 -0.3
2,870,697 + SMc00710 0.73 -3.1
2,870,697 + SMc00710 0.73 -4.1
2,870,697 + SMc00710 0.73 -2.2
2,870,697 + SMc00710 0.73 +0.4
2,870,698 - SMc00710 0.73 -0.2
2,870,698 - SMc00710 0.73 +0.3
2,870,942 + -3.9
2,870,943 - +1.0
2,870,943 - -0.4
2,871,053 + +2.3
2,871,054 - -0.8
2,871,054 - +0.4
2,871,054 - +0.3
2,871,126 + -0.0
2,871,126 + -0.1
2,871,584 + SMc00709 0.60 -1.3
2,871,585 - SMc00709 0.60 -0.5
2,871,585 - SMc00709 0.60 -3.1
2,871,585 - SMc00709 0.60 -0.9
2,871,595 + SMc00709 0.61 -1.0
2,871,846 + -0.9
2,871,846 + -1.1
2,871,847 - -0.0
2,871,892 + -0.4
2,871,893 - +0.4
2,871,906 + +0.0
2,871,928 + -1.5
2,871,929 - +0.7
2,872,037 - +0.8
2,872,037 - +0.0
2,872,037 - +0.2
2,872,037 - +0.3
2,872,037 - +0.4
2,872,062 + +1.1
2,872,063 - +1.1
2,872,259 + SMc00708 0.35 -0.6
2,872,260 - SMc00708 0.35 +0.2
2,872,510 + SMc00708 0.67 +0.5
2,872,510 + SMc00708 0.67 -0.4
2,872,510 + SMc00708 0.67 -0.7
2,872,510 + SMc00708 0.67 -0.1
2,872,510 + SMc00708 0.67 -0.1
2,872,510 + SMc00708 0.67 -0.5
2,872,510 + SMc00708 0.67 +0.2
2,872,511 - SMc00708 0.67 -0.7
2,872,511 - SMc00708 0.67 -0.1
2,872,511 - SMc00708 0.67 +0.9
2,872,511 - SMc00708 0.67 +0.5
2,872,736 + -1.5
2,872,793 - -0.5
2,872,793 - +0.3
2,872,793 - +0.1

Or see this region's nucleotide sequence