Experiment: Lactitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00710 and SMc00709 are separated by 124 nucleotides SMc00709 and SMc00708 are separated by 101 nucleotides SMc00708 and SMc00707 are separated by 1 nucleotides
SMc00710: SMc00710 - histidinol-phosphate aminotransferase, at 2,869,894 to 2,871,000
SMc00710
SMc00709: SMc00709 - hypothetical protein, at 2,871,125 to 2,871,889
SMc00709
SMc00708: SMc00708 - hydroxyacylglutathione hydrolase (glyoxalase II) (GLX II) protein, at 2,871,991 to 2,872,761
SMc00708
SMc00707: SMc00707 - hypothetical protein, at 2,872,763 to 2,873,203
SMc00707
Position (kb)
2871
2872 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2870.291 kb on + strand, within SMc00710 at 2870.292 kb on - strand, within SMc00710 at 2870.292 kb on - strand, within SMc00710 at 2870.324 kb on + strand, within SMc00710 at 2870.324 kb on + strand, within SMc00710 at 2870.324 kb on + strand, within SMc00710 at 2870.325 kb on - strand, within SMc00710 at 2870.325 kb on - strand, within SMc00710 at 2870.393 kb on + strand, within SMc00710 at 2870.393 kb on + strand, within SMc00710 at 2870.393 kb on + strand, within SMc00710 at 2870.393 kb on + strand, within SMc00710 at 2870.412 kb on - strand, within SMc00710 at 2870.412 kb on - strand, within SMc00710 at 2870.412 kb on - strand, within SMc00710 at 2870.493 kb on + strand, within SMc00710 at 2870.493 kb on + strand, within SMc00710 at 2870.495 kb on + strand, within SMc00710 at 2870.495 kb on + strand, within SMc00710 at 2870.495 kb on + strand at 2870.495 kb on + strand, within SMc00710 at 2870.495 kb on + strand, within SMc00710 at 2870.495 kb on + strand, within SMc00710 at 2870.496 kb on - strand, within SMc00710 at 2870.496 kb on - strand, within SMc00710 at 2870.496 kb on - strand, within SMc00710 at 2870.496 kb on - strand, within SMc00710 at 2870.496 kb on - strand, within SMc00710 at 2870.496 kb on - strand, within SMc00710 at 2870.496 kb on - strand, within SMc00710 at 2870.496 kb on - strand, within SMc00710 at 2870.496 kb on - strand, within SMc00710 at 2870.496 kb on - strand, within SMc00710 at 2870.496 kb on - strand, within SMc00710 at 2870.496 kb on - strand, within SMc00710 at 2870.496 kb on - strand, within SMc00710 at 2870.496 kb on - strand, within SMc00710 at 2870.564 kb on - strand, within SMc00710 at 2870.693 kb on + strand, within SMc00710 at 2870.694 kb on - strand, within SMc00710 at 2870.694 kb on - strand, within SMc00710 at 2870.697 kb on + strand, within SMc00710 at 2870.697 kb on + strand, within SMc00710 at 2870.697 kb on + strand, within SMc00710 at 2870.697 kb on + strand, within SMc00710 at 2870.698 kb on - strand, within SMc00710 at 2870.698 kb on - strand, within SMc00710 at 2870.942 kb on + strand at 2870.943 kb on - strand at 2870.943 kb on - strand at 2871.053 kb on + strand at 2871.054 kb on - strand at 2871.054 kb on - strand at 2871.054 kb on - strand at 2871.126 kb on + strand at 2871.126 kb on + strand at 2871.584 kb on + strand, within SMc00709 at 2871.585 kb on - strand, within SMc00709 at 2871.585 kb on - strand, within SMc00709 at 2871.585 kb on - strand, within SMc00709 at 2871.595 kb on + strand, within SMc00709 at 2871.846 kb on + strand at 2871.846 kb on + strand at 2871.847 kb on - strand at 2871.892 kb on + strand at 2871.893 kb on - strand at 2871.906 kb on + strand at 2871.928 kb on + strand at 2871.929 kb on - strand at 2872.037 kb on - strand at 2872.037 kb on - strand at 2872.037 kb on - strand at 2872.037 kb on - strand at 2872.037 kb on - strand at 2872.062 kb on + strand at 2872.063 kb on - strand at 2872.259 kb on + strand, within SMc00708 at 2872.260 kb on - strand, within SMc00708 at 2872.510 kb on + strand, within SMc00708 at 2872.510 kb on + strand, within SMc00708 at 2872.510 kb on + strand, within SMc00708 at 2872.510 kb on + strand, within SMc00708 at 2872.510 kb on + strand, within SMc00708 at 2872.510 kb on + strand, within SMc00708 at 2872.510 kb on + strand, within SMc00708 at 2872.511 kb on - strand, within SMc00708 at 2872.511 kb on - strand, within SMc00708 at 2872.511 kb on - strand, within SMc00708 at 2872.511 kb on - strand, within SMc00708 at 2872.736 kb on + strand at 2872.793 kb on - strand at 2872.793 kb on - strand at 2872.793 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol (C) remove 2,870,291 + SMc00710 0.36 -1.1 2,870,292 - SMc00710 0.36 -0.3 2,870,292 - SMc00710 0.36 -0.1 2,870,324 + SMc00710 0.39 +0.5 2,870,324 + SMc00710 0.39 -4.0 2,870,324 + SMc00710 0.39 -3.8 2,870,325 - SMc00710 0.39 -0.3 2,870,325 - SMc00710 0.39 -0.1 2,870,393 + SMc00710 0.45 -0.9 2,870,393 + SMc00710 0.45 -0.9 2,870,393 + SMc00710 0.45 -3.1 2,870,393 + SMc00710 0.45 -1.3 2,870,412 - SMc00710 0.47 -1.2 2,870,412 - SMc00710 0.47 -0.4 2,870,412 - SMc00710 0.47 +0.2 2,870,493 + SMc00710 0.54 -1.8 2,870,493 + SMc00710 0.54 -1.7 2,870,495 + SMc00710 0.54 -2.5 2,870,495 + SMc00710 0.54 -1.2 2,870,495 + +1.3 2,870,495 + SMc00710 0.54 -1.8 2,870,495 + SMc00710 0.54 -1.7 2,870,495 + SMc00710 0.54 -4.1 2,870,496 - SMc00710 0.54 -0.3 2,870,496 - SMc00710 0.54 -0.7 2,870,496 - SMc00710 0.54 -0.2 2,870,496 - SMc00710 0.54 +1.0 2,870,496 - SMc00710 0.54 -0.1 2,870,496 - SMc00710 0.54 -0.3 2,870,496 - SMc00710 0.54 -1.4 2,870,496 - SMc00710 0.54 +0.1 2,870,496 - SMc00710 0.54 +0.5 2,870,496 - SMc00710 0.54 +0.6 2,870,496 - SMc00710 0.54 -0.1 2,870,496 - SMc00710 0.54 -0.1 2,870,496 - SMc00710 0.54 +0.1 2,870,496 - SMc00710 0.54 -0.7 2,870,564 - SMc00710 0.61 -1.7 2,870,693 + SMc00710 0.72 +0.3 2,870,694 - SMc00710 0.72 +1.0 2,870,694 - SMc00710 0.72 -0.3 2,870,697 + SMc00710 0.73 -3.1 2,870,697 + SMc00710 0.73 -4.1 2,870,697 + SMc00710 0.73 -2.2 2,870,697 + SMc00710 0.73 +0.4 2,870,698 - SMc00710 0.73 -0.2 2,870,698 - SMc00710 0.73 +0.3 2,870,942 + -3.9 2,870,943 - +1.0 2,870,943 - -0.4 2,871,053 + +2.3 2,871,054 - -0.8 2,871,054 - +0.4 2,871,054 - +0.3 2,871,126 + -0.0 2,871,126 + -0.1 2,871,584 + SMc00709 0.60 -1.3 2,871,585 - SMc00709 0.60 -0.5 2,871,585 - SMc00709 0.60 -3.1 2,871,585 - SMc00709 0.60 -0.9 2,871,595 + SMc00709 0.61 -1.0 2,871,846 + -0.9 2,871,846 + -1.1 2,871,847 - -0.0 2,871,892 + -0.4 2,871,893 - +0.4 2,871,906 + +0.0 2,871,928 + -1.5 2,871,929 - +0.7 2,872,037 - +0.8 2,872,037 - +0.0 2,872,037 - +0.2 2,872,037 - +0.3 2,872,037 - +0.4 2,872,062 + +1.1 2,872,063 - +1.1 2,872,259 + SMc00708 0.35 -0.6 2,872,260 - SMc00708 0.35 +0.2 2,872,510 + SMc00708 0.67 +0.5 2,872,510 + SMc00708 0.67 -0.4 2,872,510 + SMc00708 0.67 -0.7 2,872,510 + SMc00708 0.67 -0.1 2,872,510 + SMc00708 0.67 -0.1 2,872,510 + SMc00708 0.67 -0.5 2,872,510 + SMc00708 0.67 +0.2 2,872,511 - SMc00708 0.67 -0.7 2,872,511 - SMc00708 0.67 -0.1 2,872,511 - SMc00708 0.67 +0.9 2,872,511 - SMc00708 0.67 +0.5 2,872,736 + -1.5 2,872,793 - -0.5 2,872,793 - +0.3 2,872,793 - +0.1
Or see this region's nucleotide sequence