Experiment: Lactitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00655 and SMc00654 are separated by 550 nucleotides SMc00654 and SMc00653 are separated by 374 nucleotides SMc00653 and SMc00652 are separated by 242 nucleotides
SMc00655: SMc00655 - hypothetical protein, at 2,921,179 to 2,921,529
SMc00655
SMc00654: SMc00654 - response regulator,controls chromosomal replication initiation protein, at 2,922,080 to 2,922,781
SMc00654
SMc00653: SMc00653 - 2-component receiver domain-containing protein, at 2,923,156 to 2,923,524
SMc00653
SMc00652: SMc00652 - hypothetical protein, at 2,923,767 to 2,924,432
SMc00652
Position (kb)
2922
2923 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2921.092 kb on + strand at 2921.093 kb on - strand at 2921.157 kb on - strand at 2921.168 kb on + strand at 2921.169 kb on - strand at 2921.634 kb on - strand at 2922.900 kb on + strand at 2922.901 kb on - strand at 2922.914 kb on + strand at 2922.914 kb on + strand at 2922.914 kb on + strand at 2922.915 kb on - strand at 2922.915 kb on - strand at 2922.915 kb on - strand at 2923.286 kb on + strand, within SMc00653 at 2923.287 kb on - strand, within SMc00653 at 2923.287 kb on - strand, within SMc00653 at 2923.289 kb on + strand, within SMc00653 at 2923.289 kb on + strand, within SMc00653 at 2923.289 kb on + strand, within SMc00653 at 2923.290 kb on - strand, within SMc00653 at 2923.290 kb on - strand, within SMc00653 at 2923.327 kb on - strand, within SMc00653 at 2923.476 kb on + strand, within SMc00653 at 2923.476 kb on + strand, within SMc00653 at 2923.573 kb on - strand at 2923.573 kb on - strand at 2923.573 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol (C) remove 2,921,092 + -0.3 2,921,093 - +0.5 2,921,157 - +0.3 2,921,168 + +0.2 2,921,169 - -0.1 2,921,634 - -1.1 2,922,900 + +0.4 2,922,901 - -0.9 2,922,914 + +0.1 2,922,914 + +2.1 2,922,914 + -0.4 2,922,915 - +0.3 2,922,915 - +0.4 2,922,915 - +0.6 2,923,286 + SMc00653 0.35 -0.2 2,923,287 - SMc00653 0.36 -0.4 2,923,287 - SMc00653 0.36 +1.0 2,923,289 + SMc00653 0.36 +0.8 2,923,289 + SMc00653 0.36 -1.8 2,923,289 + SMc00653 0.36 -1.7 2,923,290 - SMc00653 0.36 +0.2 2,923,290 - SMc00653 0.36 +1.2 2,923,327 - SMc00653 0.46 -0.0 2,923,476 + SMc00653 0.87 -0.5 2,923,476 + SMc00653 0.87 -0.5 2,923,573 - +0.2 2,923,573 - -0.8 2,923,573 - +0.2
Or see this region's nucleotide sequence